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Spg024397 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024397
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:23060598..23064236
RNA-Seq ExpressionSpg024397
SyntenySpg024397
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1287.5Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-1274.58Show/hide
Query:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        TV ++ +F   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY+E V+
Subjt:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-1281.48Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLF
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ESV +V +LF
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLF
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.8e-1287.5Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-1274.58Show/hide
Query:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        TV ++ +F   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY+E V+
Subjt:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.0e-1281.48Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLF
        PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ESV +V +LF
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLF
A0A5A7V9N3 Reverse transcriptase1.4e-1287.5Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
A0A5A7VMG9 Reverse transcriptase1.8e-1274.58Show/hide
Query:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        TV ++ +F   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY+E V+
Subjt:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
A0A5D3DSY7 Putative Retrotransposon protein1.4e-1287.5Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV+
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
A0A5D3DX39 Reverse transcriptase1.8e-1274.58Show/hide
Query:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
        TV ++ +F   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY+E V+
Subjt:  TVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTAACAGTTGAATCAAAAGCTCTATTTGGTTA
TATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCT
CCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGTTTCTTAAGCAATCAAGTAAATCACATCACGTG
CACGACACTCGAGATAAGGCCAGTGAGCCTCATTTCATCTTCTTCCTCAAGACCGTTCGTTCGAATTCTCTCTCAAAGAAAACCCTAGCCTCTCTGATACCAAAAGCCAT
GTCTCTAGACGACTCACAGAACATATCGGCTAGCGGTTATGATGAAGACGATGAGGTCCCTTCCTCGCCGAAGGTACAAGGCCCATACCGTGGCGTCGAGCTCTCCTCTG
ATGAAGTGCAGCCGACGGTCGAGCCAGTCACCTTCATCCCCACCATCCCTACCCGCTTCCCTCAAAACCCCACTGCACCTTCCCTACATTCTCCCAAGCCTGCTAACTCT
TCACATTCTAACCCACCTTCCACCTCTCAAAACCCTCCCCACCCTTCGCCTCCATCGACCTCCGCGACTGAAGCTCTCCCCTCCGTAGACCTCCCTATGCTCCACCTAAC
GAAACAAGAGGAAGCTATCTGGAACTCCCTGATGGGAGAAATTGACGCGAAAGGCGAAGCCCTGTGCCAGCGCGAAGACGCGCAAAAGCTGTCTGATGCACTAGAAGCCG
AGGGGAATGCGTTGCTAAATGCTCAAGACGAAAGCTTCCTCAGTGAAGTCTTAGGAGTTGTCGCAAGGCCAGGCGCCAGATGGGAAGGGCGCGACACAACATGGATTTTG
AGATCGCAATGGCTATCCTTAGAAGCCACTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTAACAGTTGAATCAAAAGCTCTATTTGGTTA
TATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAATCAAGCT
CCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGTTTCTTAAGCAATCAAGTAAATCACATCACGTG
CACGACACTCGAGATAAGGCCAGTGAGCCTCATTTCATCTTCTTCCTCAAGACCGTTCGTTCGAATTCTCTCTCAAAGAAAACCCTAGCCTCTCTGATACCAAAAGCCAT
GTCTCTAGACGACTCACAGAACATATCGGCTAGCGGTTATGATGAAGACGATGAGGTCCCTTCCTCGCCGAAGGTACAAGGCCCATACCGTGGCGTCGAGCTCTCCTCTG
ATGAAGTGCAGCCGACGGTCGAGCCAGTCACCTTCATCCCCACCATCCCTACCCGCTTCCCTCAAAACCCCACTGCACCTTCCCTACATTCTCCCAAGCCTGCTAACTCT
TCACATTCTAACCCACCTTCCACCTCTCAAAACCCTCCCCACCCTTCGCCTCCATCGACCTCCGCGACTGAAGCTCTCCCCTCCGTAGACCTCCCTATGCTCCACCTAAC
GAAACAAGAGGAAGCTATCTGGAACTCCCTGATGGGAGAAATTGACGCGAAAGGCGAAGCCCTGTGCCAGCGCGAAGACGCGCAAAAGCTGTCTGATGCACTAGAAGCCG
AGGGGAATGCGTTGCTAAATGCTCAAGACGAAAGCTTCCTCAGTGAAGTCTTAGGAGTTGTCGCAAGGCCAGGCGCCAGATGGGAAGGGCGCGACACAACATGGATTTTG
AGATCGCAATGGCTATCCTTAGAAGCCACTGCCTAG
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWFSLVFRAFWGVTVESKALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLFNVQEGQRFLKQSSKSHHV
HDTRDKASEPHFIFFLKTVRSNSLSKKTLASLIPKAMSLDDSQNISASGYDEDDEVPSSPKVQGPYRGVELSSDEVQPTVEPVTFIPTIPTRFPQNPTAPSLHSPKPANS
SHSNPPSTSQNPPHPSPPSTSATEALPSVDLPMLHLTKQEEAIWNSLMGEIDAKGEALCQREDAQKLSDALEAEGNALLNAQDESFLSEVLGVVARPGARWEGRDTTWIL
RSQWLSLEATA