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Spg024405 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024405
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold9:23923568..23928379
RNA-Seq ExpressionSpg024405
SyntenySpg024405
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034955.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-0781.08Show/hide
Query:  ESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
        ESG  ADSI L F DKTEWGAGN+ITQDGIHSFP LG
Subjt:  ESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
KAA0043586.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-0673.68Show/hide
Query:  GESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
        GESG  ADS +  FG+K EWGAGN+ITQDGIHSFP LG
Subjt:  GESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
KAA0062047.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.4e-0670.73Show/hide
Query:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGEK
        MGESG   DS  L F DKTEWGAGN+ITQD IHSFP +GE+
Subjt:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGEK
TYK04972.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.5e-0571.79Show/hide
Query:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
        MGESG   DSI L F DKTEW AGN+ITQD IHSFP +G
Subjt:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
TYK30754.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-0670Show/hide
Query:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGE
        +G+SG  ADSI L F DKT+WG GN+ITQDGIHSFP LG+
Subjt:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGE
TrEMBL top hitse value%identityAlignment
A0A5A7T0G5 Gag/pol protein3.0e-0781.08Show/hide
Query:  ESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
        ESG  ADSI L F DKTEWGAGN+ITQDGIHSFP LG
Subjt:  ESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
A0A5A7TNG3 Gag/pol protein1.9e-0673.68Show/hide
Query:  GESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
        GESG  ADS +  FG+K EWGAGN+ITQDGIHSFP LG
Subjt:  GESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
A0A5A7V524 Retrotransposable element Tf26.6e-0770.73Show/hide
Query:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGEK
        MGESG   DS  L F DKTEWGAGN+ITQD IHSFP +GE+
Subjt:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGEK
A0A5D3C1B9 Transposon Tf2-6 polyprotein7.3e-0671.79Show/hide
Query:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
        MGESG   DSI L F DKTEW AGN+ITQD IHSFP +G
Subjt:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLG
A0A5D3E4C4 Gag/pol protein6.6e-0770Show/hide
Query:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGE
        +G+SG  ADSI L F DKT+WG GN+ITQDGIHSFP LG+
Subjt:  MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCATTTGGGGACAAGACTGAGTGGGGAGCTGGGAACGTAATCACACAAGATGGAATTCACTCCTTCCCGAC
TCTAGGTGAGAAGAGTGCAGCTGTGGAATGCGATCCCACAATCACATACTTCAAGAATCCAGAGCATAGTGGGTGCTCATTGATGGTGGTGTTCGTTGGACAAATTGTTC
GTGTTTTTTGGAGCATAGTGATGTGGAATCGTTCTACAACAAATCCATTAGGTCCCACCATTAGCTCATTAAGGGCGTTAAGCGAATCAAAGATCAAGGGACTGTTGCAA
GTAAAAGAAGAAAAGCTAAGAGAATTTGGTGAAATTCGGTCAAGACTACAACGACACGTGAAGTCAGCCCTAATTAGGTCAAATATTACACATGGAACTCTCTCCAAGCT
TCTTAAATCCGAGATCACTGCTGGACAAGCAACCTCATTAATGAATCACGTGCAGCTCACGTGGCCAGTTTCGCTCACAGCTTTGCTGGATCATGGATTTTACTCCCTCA
ACTCTATCAACATTAACTTCTCTGCAAAAGAACTTCCAAAGCATCAATTCTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCATTTGGGGACAAGACTGAGTGGGGAGCTGGGAACGTAATCACACAAGATGGAATTCACTCCTTCCCGAC
TCTAGGTGAGAAGAGTGCAGCTGTGGAATGCGATCCCACAATCACATACTTCAAGAATCCAGAGCATAGTGGGTGCTCATTGATGGTGGTGTTCGTTGGACAAATTGTTC
GTGTTTTTTGGAGCATAGTGATGTGGAATCGTTCTACAACAAATCCATTAGGTCCCACCATTAGCTCATTAAGGGCGTTAAGCGAATCAAAGATCAAGGGACTGTTGCAA
GTAAAAGAAGAAAAGCTAAGAGAATTTGGTGAAATTCGGTCAAGACTACAACGACACGTGAAGTCAGCCCTAATTAGGTCAAATATTACACATGGAACTCTCTCCAAGCT
TCTTAAATCCGAGATCACTGCTGGACAAGCAACCTCATTAATGAATCACGTGCAGCTCACGTGGCCAGTTTCGCTCACAGCTTTGCTGGATCATGGATTTTACTCCCTCA
ACTCTATCAACATTAACTTCTCTGCAAAAGAACTTCCAAAGCATCAATTCTTATAA
Protein sequenceShow/hide protein sequence
MGESGLHADSISLPFGDKTEWGAGNVITQDGIHSFPTLGEKSAAVECDPTITYFKNPEHSGCSLMVVFVGQIVRVFWSIVMWNRSTTNPLGPTISSLRALSESKIKGLLQ
VKEEKLREFGEIRSRLQRHVKSALIRSNITHGTLSKLLKSEITAGQATSLMNHVQLTWPVSLTALLDHGFYSLNSININFSAKELPKHQFL