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Spg024411 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024411
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold9:23893140..23900611
RNA-Seq ExpressionSpg024411
SyntenySpg024411
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-2950.76Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------
        MQSQPLQ+L +T                 STGFSSK GG LVFSD LSIL                           PRGNR SLQT ELDKT       
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                V IELPVPD LPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.5e-3254.64Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-3255.68Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------
        MQS PL++L +T                 STGFSSK G  LVFSD LSIL                    PRGN+ SLQTGELDKT              
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------

Query:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
           VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.9e-3356.04Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV
        MQSQPLQ+L +T                 STGFSSK GG LV SD LSI           LGPRGNR SLQTGELDKTV                IELPV
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV

Query:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.5e-3254.64Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein7.3e-3050.76Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------
        MQSQPLQ+L +T                 STGFSSK GG LVFSD LSIL                           PRGNR SLQT ELDKT       
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSILG--------------------------PRGNRSSLQTGELDKT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                V IELPVPD LPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  --------VEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase4.6e-3254.64Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.6e-3255.68Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------
        MQS PL++L +T                 STGFSSK G  LVFSD LSIL                    PRGN+ SLQTGELDKT              
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSIL-------------------GPRGNRSSLQTGELDKT--------------

Query:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
           VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Subjt:  ---VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein1.9e-3356.04Show/hide
Query:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV
        MQSQPLQ+L +T                 STGFSSK GG LV SD LSI           LGPRGNR SLQTGELDKTV                IELPV
Subjt:  MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPV

Query:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PDTLPTSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  PDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein4.6e-3254.64Show/hide
Query:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP
        MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                         RGNRSSLQ+GELD T                 VEIELP
Subjt:  MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELP

Query:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  VPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCT
GGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAT
CAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTC
TGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAAAGCAGAGAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGGCAGACAGAG
GCAGTTGCGAGTCTGCCGCGGGTCATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCT
GGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAT
CAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTC
TGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAAAGCAGAGAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGGCAGACAGAG
GCAGTTGCGAGTCTGCCGCGGGTCATTTTGA
Protein sequenceShow/hide protein sequence
MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDV
CWLHAVFRAKLAGGPGGEKQRKLEFPRNATAFLGRQRQLRVCRGSF