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Spg024449 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024449
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:17023967..17025917
RNA-Seq ExpressionSpg024449
SyntenySpg024449
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-2257.02Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI
        +VEIELPVPDTLPTSAES  S+SSTWLELY ESV  +                +++GS GIVRGDDVCWLHAVFRAK AGGPGGGVT  V   +    + 
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI

Query:  TRSSLQVSIKEVGT
        TRS L  S +   T
Subjt:  TRSSLQVSIKEVGT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-2369.66Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.6e-2269.77Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        IELPVPDTLPTSAESS S+SSTWLELY ESV                   F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-2257.02Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI
        +VEIELPVPDTLPTSAES  S+SSTWLELY ESV  +                +++GS GIVRGDDVCWLHAVFRAK AGGPGGGVT  V   +    + 
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI

Query:  TRSSLQVSIKEVGT
        TRS L  S +   T
Subjt:  TRSSLQVSIKEVGT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]5.4e-2369.66Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.3e-2257.02Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI
        +VEIELPVPDTLPTSAES  S+SSTWLELY ESV  +                +++GS GIVRGDDVCWLHAVFRAK AGGPGGGVT  V   +    + 
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI

Query:  TRSSLQVSIKEVGT
        TRS L  S +   T
Subjt:  TRSSLQVSIKEVGT

A0A5A7V9N3 Reverse transcriptase2.6e-2369.66Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein2.2e-2269.77Show/hide
Query:  IELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        IELPVPDTLPTSAESS S+SSTWLELY ESV                   F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  IELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3D150 Reverse transcriptase1.3e-2257.02Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI
        +VEIELPVPDTLPTSAES  S+SSTWLELY ESV  +                +++GS GIVRGDDVCWLHAVFRAK AGGPGGGVT  V   +    + 
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------ARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNI

Query:  TRSSLQVSIKEVGT
        TRS L  S +   T
Subjt:  TRSSLQVSIKEVGT

A0A5D3DSY7 Putative Retrotransposon protein2.6e-2369.66Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        +VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTT
CCAAGCCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGG
GTGTGACACTAAAGGTTGTCCAAGAGAAGTTGGAGAAAGATAATATCACAAGGAGTTCCTTACAAGTGAGCATCAAAGAGGTTGGTACTCATTTACTCTCTTTTCTACCC
TTTCTAGAACATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCACATGTGTTATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTT
CCAAGCCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGG
GTGTGACACTAAAGGTTGTCCAAGAGAAGTTGGAGAAAGATAATATCACAAGGAGTTCCTTACAAGTGAGCATCAAAGAGGTTGGTACTCATTTACTCTCTTTTCTACCC
TTTCTAGAACATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCACATGTGTTATATGA
Protein sequenceShow/hide protein sequence
MLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQARFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTLKVVQEKLEKDNITRSSLQVSIKEVGTHLLSFLP
FLEHACFRSKIECLKCFRSSIASTCVI