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Spg024462 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024462
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:16693006..16695392
RNA-Seq ExpressionSpg024462
SyntenySpg024462
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-1837.86Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR----------------PRGNRSSLQTGELDKT--------------------------
        V+KSNQKLYLI+  REPRI + C+      + W    F F +                PRGNR SLQT E+DKT                          
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR----------------PRGNRSSLQTGELDKT--------------------------

Query:  ----------------------VEIELLVPDTLPTSAESSRTSSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRDKLAGG
                              VEIEL VPD LPTSAESSR++SSTW+ELY E  +V+   +V L+                 DDV WLHAIFR K AGG
Subjt:  ----------------------VEIELLVPDTLPTSAESSRTSSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRDKLAGG

Query:  PGGAST
        PGG  T
Subjt:  PGGAST

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1844.24Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV
        V+KSNQKLYL   S           G SG+  W+        RGNRSSLQ+GELD T                 VEIEL VPDTLPTSAESS ++SSTW+
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV

Query:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE
        ELY E                     F+V  G    +  DDV WLHA+FR K  GGPGG  T LE
Subjt:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.9e-2345.14Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR--------------PRGNRSSLQTGELDKT-----------------VEIELLVPDTL
        V+KSNQKLYLI+  REPRI + C+        W    F F +              PRGNRSSLQTGELDKT                 VEIEL VPDTL
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR--------------PRGNRSSLQTGELDKT-----------------VEIELLVPDTL

Query:  PTSAESSRTSSSTWVELYIEF-NVQ-----------------EGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTK
        PTSAES  ++SSTW+ELY EF +V+                 EG    +  DDV WLH +FR K+AGGPGG  T+
Subjt:  PTSAESSRTSSSTWVELYIEF-NVQ-----------------EGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTK

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.0e-2235.02Show/hide
Query:  LVIFSPISSSFF----IQLSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNWHRIVEQTRRISGVLWCFEHSGVYKSNQKLYLIKGSREPRI
        L++F P   SF      +LSEHF+ERVK EEEEEFRG  +++  KSSCKA+H RIW   +          S  L   E   V KSNQKLY    S     
Subjt:  LVIFSPISSSFF----IQLSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNWHRIVEQTRRISGVLWCFEHSGVYKSNQKLYLIKGSREPRI

Query:  CIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDK---------------------------------------------------------------
              G SG+  W+       PRGNRSSLQTG+LDK                                                               
Subjt:  CIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDK---------------------------------------------------------------

Query:  ----------------TVEIELLVPDTLPTSAESSRTSSSTWVELYIEF-----NVQEGQRVSLE--------EDDVRWLHAIFRDKLAGGPGGAST
                        ++EIELLVPDTLPTSAESS ++SSTW+E   E      +V+   R+  E        E+DV WLHA+FR K+AGG GG  T
Subjt:  ----------------TVEIELLVPDTLPTSAESSRTSSSTWVELYIEF-----NVQEGQRVSLE--------EDDVRWLHAIFRDKLAGGPGGAST

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.1e-1844.24Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV
        V+KSNQKLYL   S           G SG+  W+        RGNRSSLQ+GELD T                 VEIEL VPDTLPTSAESS ++SSTW+
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV

Query:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE
        ELY E                     F+V  G    +  DDV WLHA+FR K  GGPGG  T LE
Subjt:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.5e-1844.24Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV
        V+KSNQKLYL   S           G SG+  W+        RGNRSSLQ+GELD T                 VEIEL VPDTLPTSAESS ++SSTW+
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV

Query:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE
        ELY E                     F+V  G    +  DDV WLHA+FR K  GGPGG  T LE
Subjt:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE

A0A5A7VIY9 Uncharacterized protein9.1e-2445.14Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR--------------PRGNRSSLQTGELDKT-----------------VEIELLVPDTL
        V+KSNQKLYLI+  REPRI + C+        W    F F +              PRGNRSSLQTGELDKT                 VEIEL VPDTL
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR--------------PRGNRSSLQTGELDKT-----------------VEIELLVPDTL

Query:  PTSAESSRTSSSTWVELYIEF-NVQ-----------------EGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTK
        PTSAES  ++SSTW+ELY EF +V+                 EG    +  DDV WLH +FR K+AGGPGG  T+
Subjt:  PTSAESSRTSSSTWVELYIEF-NVQ-----------------EGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTK

A0A5D3BTP3 Reverse transcriptase2.0e-1837.86Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR----------------PRGNRSSLQTGELDKT--------------------------
        V+KSNQKLYLI+  REPRI + C+      + W    F F +                PRGNR SLQT E+DKT                          
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGW-ESHFHFFR----------------PRGNRSSLQTGELDKT--------------------------

Query:  ----------------------VEIELLVPDTLPTSAESSRTSSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRDKLAGG
                              VEIEL VPD LPTSAESSR++SSTW+ELY E  +V+   +V L+                 DDV WLHAIFR K AGG
Subjt:  ----------------------VEIELLVPDTLPTSAESSRTSSSTWVELYIE-FNVQEGQRVSLEE----------------DDVRWLHAIFRDKLAGG

Query:  PGGAST
        PGG  T
Subjt:  PGGAST

A0A5D3CAC6 Uncharacterized protein2.9e-2235.02Show/hide
Query:  LVIFSPISSSFF----IQLSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNWHRIVEQTRRISGVLWCFEHSGVYKSNQKLYLIKGSREPRI
        L++F P   SF      +LSEHF+ERVK EEEEEFRG  +++  KSSCKA+H RIW   +          S  L   E   V KSNQKLY    S     
Subjt:  LVIFSPISSSFF----IQLSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNWHRIVEQTRRISGVLWCFEHSGVYKSNQKLYLIKGSREPRI

Query:  CIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDK---------------------------------------------------------------
              G SG+  W+       PRGNRSSLQTG+LDK                                                               
Subjt:  CIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDK---------------------------------------------------------------

Query:  ----------------TVEIELLVPDTLPTSAESSRTSSSTWVELYIEF-----NVQEGQRVSLE--------EDDVRWLHAIFRDKLAGGPGGAST
                        ++EIELLVPDTLPTSAESS ++SSTW+E   E      +V+   R+  E        E+DV WLHA+FR K+AGG GG  T
Subjt:  ----------------TVEIELLVPDTLPTSAESSRTSSSTWVELYIEF-----NVQEGQRVSLE--------EDDVRWLHAIFRDKLAGGPGGAST

A0A5D3DSY7 Putative Retrotransposon protein1.5e-1844.24Show/hide
Query:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV
        V+KSNQKLYL   S           G SG+  W+        RGNRSSLQ+GELD T                 VEIEL VPDTLPTSAESS ++SSTW+
Subjt:  VYKSNQKLYLIKGSREPRICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKT-----------------VEIELLVPDTLPTSAESSRTSSSTWV

Query:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE
        ELY E                     F+V  G    +  DDV WLHA+FR K  GGPGG  T LE
Subjt:  ELYIE---------------------FNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAATGCCCCACCACCGCCTAAGCTGATCACCAACCTATTTTTAGTCATTTTCAGCCCCATTTCCTCATCATTTTTCATCCAACTTTCAGAGCACTTTAAGGA
GAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGGCACA
GGATTGTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGATAAAGGGTAGCAGAGAACCT
CGAATCTGTATTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACT
AGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTATATATTGAGTTCAACG
TTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGATAAGCTAGCAGGTGGTCCGGGAGGGGCATCGACCAAGCTAGAA
GAATTGCTCAAGCAAAAGGTTTCTGGAGATCAGAATACCTTGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAATGCCCCACCACCGCCTAAGCTGATCACCAACCTATTTTTAGTCATTTTCAGCCCCATTTCCTCATCATTTTTCATCCAACTTTCAGAGCACTTTAAGGA
GAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGGCACA
GGATTGTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGATAAAGGGTAGCAGAGAACCT
CGAATCTGTATTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACT
AGATAAGACAGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTATATATTGAGTTCAACG
TTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGATAAGCTAGCAGGTGGTCCGGGAGGGGCATCGACCAAGCTAGAA
GAATTGCTCAAGCAAAAGGTTTCTGGAGATCAGAATACCTTGATCTAA
Protein sequenceShow/hide protein sequence
MDSNAPPPPKLITNLFLVIFSPISSSFFIQLSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNWHRIVEQTRRISGVLWCFEHSGVYKSNQKLYLIKGSREP
RICIVCVRGNSGQIGWESHFHFFRPRGNRSSLQTGELDKTVEIELLVPDTLPTSAESSRTSSSTWVELYIEFNVQEGQRVSLEEDDVRWLHAIFRDKLAGGPGGASTKLE
ELLKQKVSGDQNTLI