; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024463 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024463
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD repeat containing protein
Genome locationscaffold12:16841440..16849556
RNA-Seq ExpressionSpg024463
SyntenySpg024463
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5043755.1 hypothetical protein JHK87_007670 [Glycine soja]9.3e-3557.72Show/hide
Query:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------------HPSKDGSV-----------------DTSF
        G    + DLNS DKDPIKS+HFSNSNP+CH FD +AKDGHDLLIGLNSGD  S                  H +KDGSV                 D+SF
Subjt:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------------HPSKDGSV-----------------DTSF

Query:  PVIKDQTQFSVSHARSSKVSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
        PV+KDQTQFSV+HAR SKVSGVAFDSYW+S  S+D  E V YRFGSVGQ
Subjt:  PVIKDQTQFSVSHARSSKVSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

KAG7036873.1 creC [Cucurbita argyrosperma subsp. argyrosperma]7.4e-3245.33Show/hide
Query:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA--------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK--------------
        + DLNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIGLNSGD             SKDGSVD++FPVIKDQTQFSV+HARSSK              
Subjt:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA--------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK--------------

Query:  -----------------------------------------------------------------------------------VSGVAFDSYWSSLASDD
                                                                                           VSGVAFDSYWSS ASDD
Subjt:  -----------------------------------------------------------------------------------VSGVAFDSYWSSLASDD

Query:  TEENVVYRFGSVGQ
        TEENVVYRFGSVGQ
Subjt:  TEENVVYRFGSVGQ

OEL19449.1 hypothetical protein BAE44_0019528 [Dichanthelium oligosanthes]5.7e-3259.38Show/hide
Query:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------HPSKDGSVDTSFPVIKDQTQFSVSHARSSKVSGVAFDSYW
        + DLNS +KDPIKS+HFSNSNP+CHAFD +AK+GHDL+IG+ SGD  +              +KDG+ D +FP +KDQTQF V+HA+SSKVSGV+FDSYW
Subjt:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------HPSKDGSVDTSFPVIKDQTQFSVSHARSSKVSGVAFDSYW

Query:  SSLASDDTEENVVYRFGSVGQIESSSCA
        S  +SD   EN VYRFGSVGQ+   S A
Subjt:  SSLASDDTEENVVYRFGSVGQIESSSCA

PON69276.1 WD repeat containing protein [Parasponia andersonii]2.8e-3151.74Show/hide
Query:  SGSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK----
        +G    + DLNS DKDPIKS+HF+NSNPICHAFD +AKDGHDL+IGLNSGD              S  SKDG+ D+SFPVIKDQTQFSVSHAR SK    
Subjt:  SGSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK----

Query:  -----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                                                 VSGVAFDSYWSS  SD TEE  VYRFGSVGQ
Subjt:  -----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

POO01638.1 WD repeat containing protein [Trema orientale]3.7e-3152.63Show/hide
Query:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK-----
        G    V DLNS DKDPIKS+HF+NSNPICHAFD +AKDGHDL+IGLNSGD              S  SKDG+ D+SFPVIKDQTQFSVSHAR SK     
Subjt:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK-----

Query:  ----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                                                VSGVAFDSYWSS  SD TEE  VYRFGSVGQ
Subjt:  ----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

TrEMBL top hitse value%identityAlignment
A0A0A0LS38 Uncharacterized protein6.3e-2940.59Show/hide
Query:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS----------------------------------------------------
        + DLNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIGLNSGD  S                                                    
Subjt:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS----------------------------------------------------

Query:  ----HPSKDGSVDTSFPVIKDQTQFSVSHARSSK------------------------------------------------------------------
              SKD SVDTSFPVIKDQTQFSV+HARSSK                                                                  
Subjt:  ----HPSKDGSVDTSFPVIKDQTQFSVSHARSSK------------------------------------------------------------------

Query:  --------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                VSGVAFDSYWSS  SDD EENVVYRFGSVGQ
Subjt:  --------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

A0A1E5V2S0 Uncharacterized protein2.7e-3259.38Show/hide
Query:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------HPSKDGSVDTSFPVIKDQTQFSVSHARSSKVSGVAFDSYW
        + DLNS +KDPIKS+HFSNSNP+CHAFD +AK+GHDL+IG+ SGD  +              +KDG+ D +FP +KDQTQF V+HA+SSKVSGV+FDSYW
Subjt:  VRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------HPSKDGSVDTSFPVIKDQTQFSVSHARSSKVSGVAFDSYW

Query:  SSLASDDTEENVVYRFGSVGQIESSSCA
        S  +SD   EN VYRFGSVGQ+   S A
Subjt:  SSLASDDTEENVVYRFGSVGQIESSSCA

A0A2P5D7Q2 WD repeat containing protein1.4e-3151.74Show/hide
Query:  SGSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK----
        +G    + DLNS DKDPIKS+HF+NSNPICHAFD +AKDGHDL+IGLNSGD              S  SKDG+ D+SFPVIKDQTQFSVSHAR SK    
Subjt:  SGSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK----

Query:  -----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                                                 VSGVAFDSYWSS  SD TEE  VYRFGSVGQ
Subjt:  -----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

A0A2P5FV24 WD repeat containing protein1.8e-3152.63Show/hide
Query:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK-----
        G    V DLNS DKDPIKS+HF+NSNPICHAFD +AKDGHDL+IGLNSGD              S  SKDG+ D+SFPVIKDQTQFSVSHAR SK     
Subjt:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDA------------TSHPSKDGSVDTSFPVIKDQTQFSVSHARSSK-----

Query:  ----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                                                VSGVAFDSYWSS  SD TEE  VYRFGSVGQ
Subjt:  ----------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

A0A4Y1RQ72 Transducin/WD40 repeat-like superfamily protein8.8e-3149.7Show/hide
Query:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS-----------------------HPSKDGSVDTSFPVIKDQTQFSVS
        G    + DLNS DKDP+KS+HFSNSNP+CHAFD +AKDGHDL+IGLNSGD  S                         SKDG+ D+SFPVIKDQ QFSV+
Subjt:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS-----------------------HPSKDGSVDTSFPVIKDQTQFSVS

Query:  HARSSK--------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
        HAR SK                                VSGVAFDSYWSS  SD   E V+YRFGSVGQ
Subjt:  HARSSK--------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37160.1 Transducin/WD40 repeat-like superfamily protein5.9e-1929.59Show/hide
Query:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGD------------------ATSHPSKDGSV---------------------
        G    + DLNS DKDP+KS+H SNSNP+CHAF  +AKDGHDLLIGLNSGD                  +  H +KDGSV                     
Subjt:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGD------------------ATSHPSKDGSV---------------------

Query:  -----------------DTSFPVIKDQTQFSVSHARSSK-------------------------------------------------------------
                         D+SF  I+D TQFSV  A+ SK                                                             
Subjt:  -----------------DTSFPVIKDQTQFSVSHARSSK-------------------------------------------------------------

Query:  ------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                                            VSGVAFDSYWSS  S+ + ENV+YRFGSVGQ
Subjt:  ------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

AT2G37160.2 Transducin/WD40 repeat-like superfamily protein5.9e-1929.59Show/hide
Query:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGD------------------ATSHPSKDGSV---------------------
        G    + DLNS DKDP+KS+H SNSNP+CHAF  +AKDGHDLLIGLNSGD                  +  H +KDGSV                     
Subjt:  GSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGD------------------ATSHPSKDGSV---------------------

Query:  -----------------DTSFPVIKDQTQFSVSHARSSK-------------------------------------------------------------
                         D+SF  I+D TQFSV  A+ SK                                                             
Subjt:  -----------------DTSFPVIKDQTQFSVSHARSSK-------------------------------------------------------------

Query:  ------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ
                                            VSGVAFDSYWSS  S+ + ENV+YRFGSVGQ
Subjt:  ------------------------------------VSGVAFDSYWSSLASDDTEENVVYRFGSVGQ

AT3G53390.1 Transducin/WD40 repeat-like superfamily protein7.6e-1941.61Show/hide
Query:  DLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------------HPSKDGSVDTS-------------------------
        DLNS +KDP+KS+HFSNSNP+CHAFD +AKDGHDLLIGLNSGD  +                  H +KDGSV+ S                         
Subjt:  DLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATS------------------HPSKDGSVDTS-------------------------

Query:  -------------FPVIKDQTQFSVSHARSSKVSGVA
                     FP I+D TQFSV  A+ SK + VA
Subjt:  -------------FPVIKDQTQFSVSHARSSKVSGVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCCGGCCGGGTTGCTTGGAGAGACACCGGGAATAAGGCCAGAAAATACTTTTTTTTGGTAGAAATTGTCTTTCCCGGTCTCGATCTCGGCCGGGAAATCCGACC
GGGATTCTCGATTGTCTTGGAGTACAGTGGCAGTGGGAGTTGCGTGCGTGACCTTAATTCACCAGATAAGGATCCTATCAAGTCTTTGCATTTTAGCAATTCAAATCCTA
TCTGCCATGCGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTGAATTCTGGAGATGCTACTTCTCATCCAAGTAAGGATGGCAGTGTTGACACTTCT
TTCCCTGTCATAAAGGATCAAACTCAATTTTCAGTATCACATGCACGGTCCAGTAAGGTAAGTGGTGTAGCTTTTGATTCATATTGGTCATCACTAGCTTCAGATGACAC
AGAGGAAAATGTTGTTTACCGATTTGGTTCAGTTGGTCAGATAGAATCCTCCAGCTGCGCCGCAAATGCCCTGACAACTAGATTATCCCGCAAATCTGGGAATTCTGTCG
GAAAGCCCAGTTGTGGCCGCAAAGTCGGGCGCAAATCTTTTGTGCACTACCTTGACACTTCTGTCTTCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCCGGCCGGGTTGCTTGGAGAGACACCGGGAATAAGGCCAGAAAATACTTTTTTTTGGTAGAAATTGTCTTTCCCGGTCTCGATCTCGGCCGGGAAATCCGACC
GGGATTCTCGATTGTCTTGGAGTACAGTGGCAGTGGGAGTTGCGTGCGTGACCTTAATTCACCAGATAAGGATCCTATCAAGTCTTTGCATTTTAGCAATTCAAATCCTA
TCTGCCATGCGTTTGATCTTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTGAATTCTGGAGATGCTACTTCTCATCCAAGTAAGGATGGCAGTGTTGACACTTCT
TTCCCTGTCATAAAGGATCAAACTCAATTTTCAGTATCACATGCACGGTCCAGTAAGGTAAGTGGTGTAGCTTTTGATTCATATTGGTCATCACTAGCTTCAGATGACAC
AGAGGAAAATGTTGTTTACCGATTTGGTTCAGTTGGTCAGATAGAATCCTCCAGCTGCGCCGCAAATGCCCTGACAACTAGATTATCCCGCAAATCTGGGAATTCTGTCG
GAAAGCCCAGTTGTGGCCGCAAAGTCGGGCGCAAATCTTTTGTGCACTACCTTGACACTTCTGTCTTCAGCTGA
Protein sequenceShow/hide protein sequence
MNPGRVAWRDTGNKARKYFFLVEIVFPGLDLGREIRPGFSIVLEYSGSGSCVRDLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGLNSGDATSHPSKDGSVDTS
FPVIKDQTQFSVSHARSSKVSGVAFDSYWSSLASDDTEENVVYRFGSVGQIESSSCAANALTTRLSRKSGNSVGKPSCGRKVGRKSFVHYLDTSVFS