; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024478 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024478
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold12:16983275..16985948
RNA-Seq ExpressionSpg024478
SyntenySpg024478
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PIN01433.1 hypothetical protein CDL12_26059 [Handroanthus impetiginosus]1.4e-1636.23Show/hide
Query:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP
        GAQW+++K E  +F++  L+  AK WL F+  R+LPT +   V+ DR LL++ I+   + DVGK+IS  I        D L+FP+ IT LC RAGV    
Subjt:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP

Query:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI
        ++ ++  +  ID   + R+        GG  P+   PI
Subjt:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI

PIN07564.1 hypothetical protein CDL12_19862 [Handroanthus impetiginosus]4.1e-1634.78Show/hide
Query:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP
        GAQW+++K E  +F++  L+  AK WL F+  ++LPT++   V+ D+ LL++ I+   + DVGK+IS+ I        D L+FP+ IT LC RAGV    
Subjt:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP

Query:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI
        ++ ++  +  ID   + R+        GG  P+   PI
Subjt:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]5.3e-1641.48Show/hide
Query:  LNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITM
        L  V+  V + GA+W +S     T   + L   AK W  F+K  LLPTT+  TVS+DR+LL+ ++L   SI+VG++I SEI  C  +K   LFFP+ IT 
Subjt:  LNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITM

Query:  LCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQE
        LC  A  P    +  L   G ID   +AR+  TQE
Subjt:  LCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQE

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]2.4e-1637.09Show/hide
Query:  SNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPN
        +   L  V+  V   GA+W +S     T   + L   AK W  F+K RLLPTT+  TVS+DR+LL+ ++L   SI+VG++I SEI  C  +K   LFFP+
Subjt:  SNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPN

Query:  TITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP
         IT LC  A  P    +  L   G ID   +AR+ +         P ++ P
Subjt:  TITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]1.8e-1636.77Show/hide
Query:  VVAPSNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKL
        V A +  +L  V+  V I GA+W +S     T   + L   AK W  F+K RLLPTT+  TVS++RVLL++++L   SI+VG++I  EI     +K   L
Subjt:  VVAPSNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKL

Query:  FFPNTITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP
        FFP+ IT +C  A  P    +  L   G ID   +AR+ +   A     P ++ P
Subjt:  FFPNTITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP

TrEMBL top hitse value%identityAlignment
A0A2G9G807 Uncharacterized protein6.8e-1736.23Show/hide
Query:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP
        GAQW+++K E  +F++  L+  AK WL F+  R+LPT +   V+ DR LL++ I+   + DVGK+IS  I        D L+FP+ IT LC RAGV    
Subjt:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP

Query:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI
        ++ ++  +  ID   + R+        GG  P+   PI
Subjt:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI

A0A2G9GQI5 Uncharacterized protein2.0e-1634.78Show/hide
Query:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP
        GAQW+++K E  +F++  L+  AK WL F+  ++LPT++   V+ D+ LL++ I+   + DVGK+IS+ I        D L+FP+ IT LC RAGV    
Subjt:  GAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITMLCNRAGVPTTP

Query:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI
        ++ ++  +  ID   + R+        GG  P+   PI
Subjt:  EDVILIEKGIIDTPNLARLQRTQEARQGG-LPYAAFPI

A0A2P5AGA5 Uncharacterized protein (Fragment)2.6e-1641.48Show/hide
Query:  LNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITM
        L  V+  V + GA+W +S     T   + L   AK W  F+K  LLPTT+  TVS+DR+LL+ ++L   SI+VG++I SEI  C  +K   LFFP+ IT 
Subjt:  LNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITM

Query:  LCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQE
        LC  A  P    +  L   G ID   +AR+  TQE
Subjt:  LCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQE

A0A2P5BCG4 Uncharacterized protein (Fragment)1.2e-1637.09Show/hide
Query:  SNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPN
        +   L  V+  V   GA+W +S     T   + L   AK W  F+K RLLPTT+  TVS+DR+LL+ ++L   SI+VG++I SEI  C  +K   LFFP+
Subjt:  SNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPN

Query:  TITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP
         IT LC  A  P    +  L   G ID   +AR+ +         P ++ P
Subjt:  TITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP

A0A2P5CPE8 Uncharacterized protein8.9e-1736.77Show/hide
Query:  VVAPSNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKL
        V A +  +L  V+  V I GA+W +S     T   + L   AK W  F+K RLLPTT+  TVS++RVLL++++L   SI+VG++I  EI     +K   L
Subjt:  VVAPSNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKL

Query:  FFPNTITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP
        FFP+ IT +C  A  P    +  L   G ID   +AR+ +   A     P ++ P
Subjt:  FFPNTITMLCNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTAGCACCATCTAATGATCAGTTGAATGTGGTTGTGAGAGAAGTTGGAATTGAAGGGGCTCAGTGGAGGTTGTCAAAGACAGAAAAGTGCACTTTTCAGGCTGC
ATATCTGGAAAGCGAAGCAAAAACCTGGTTGGGCTTCGTCAAACTGCGACTTCTGCCGACAACCAATGATTCTACAGTCTCCCGCGATAGAGTGCTCCTGGTTTTTGCAA
TCCTGAGGTCCCTAAGTATCGATGTTGGTAAGGTGATTTCTAGTGAGATCCACAACTGCTGGCGCAAAAAGGATGACAAATTGTTCTTTCCAAATACAATTACGATGTTG
TGTAATAGAGCAGGGGTGCCTACAACTCCAGAGGATGTGATTTTAATTGAAAAGGGGATTATTGACACACCCAACCTAGCAAGGCTTCAACGGACTCAAGAAGCACGACA
AGGAGGGTTACCATATGCTGCCTTCCCTATTTTCCCCGATGATTTGCTAAACCCCTGGATCCCACGCCACCAGTCGAAGATTGAAGAAGGAAAAGATGTTGGGCGAGCAT
TAATTTTGTTCGAATATTTTTGTTGCTCGCGTATTCCTGACCCCACCTGGTCATCGCTGCGGCAAGAAGATTCTGAGCAGTGTTTGGTTTTGCATGATGCTCAAGTAAAG
GTTGAAGGTAGTGTTGGATTATCTGTTTTGATGGAGTTGTGCTATGATCAATGTTTTGAATTTTCAAGGAAAGCTCATGCGTTGGTTCAGTTCTCTAATAACTTGCAAGT
GACTGCGTTAGTCCTAACACAGTCTAAGTTCATTCATGCACTATCTTATAGCGGTAGTATTAAGTCTAATGCTACCAAGACTACATGTAATGCGCTAGCTTGCTCTACTT
GGATATTTCCACATGCGTTACTTGTCATGGATTTATCATGTTGCTCTCTGGTCTCGCCTGTCTCCTCCCCTTCGTCCCTTGGGGACAAATGGATACTTTTTATAGGTCGA
GGAGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTAGCACCATCTAATGATCAGTTGAATGTGGTTGTGAGAGAAGTTGGAATTGAAGGGGCTCAGTGGAGGTTGTCAAAGACAGAAAAGTGCACTTTTCAGGCTGC
ATATCTGGAAAGCGAAGCAAAAACCTGGTTGGGCTTCGTCAAACTGCGACTTCTGCCGACAACCAATGATTCTACAGTCTCCCGCGATAGAGTGCTCCTGGTTTTTGCAA
TCCTGAGGTCCCTAAGTATCGATGTTGGTAAGGTGATTTCTAGTGAGATCCACAACTGCTGGCGCAAAAAGGATGACAAATTGTTCTTTCCAAATACAATTACGATGTTG
TGTAATAGAGCAGGGGTGCCTACAACTCCAGAGGATGTGATTTTAATTGAAAAGGGGATTATTGACACACCCAACCTAGCAAGGCTTCAACGGACTCAAGAAGCACGACA
AGGAGGGTTACCATATGCTGCCTTCCCTATTTTCCCCGATGATTTGCTAAACCCCTGGATCCCACGCCACCAGTCGAAGATTGAAGAAGGAAAAGATGTTGGGCGAGCAT
TAATTTTGTTCGAATATTTTTGTTGCTCGCGTATTCCTGACCCCACCTGGTCATCGCTGCGGCAAGAAGATTCTGAGCAGTGTTTGGTTTTGCATGATGCTCAAGTAAAG
GTTGAAGGTAGTGTTGGATTATCTGTTTTGATGGAGTTGTGCTATGATCAATGTTTTGAATTTTCAAGGAAAGCTCATGCGTTGGTTCAGTTCTCTAATAACTTGCAAGT
GACTGCGTTAGTCCTAACACAGTCTAAGTTCATTCATGCACTATCTTATAGCGGTAGTATTAAGTCTAATGCTACCAAGACTACATGTAATGCGCTAGCTTGCTCTACTT
GGATATTTCCACATGCGTTACTTGTCATGGATTTATCATGTTGCTCTCTGGTCTCGCCTGTCTCCTCCCCTTCGTCCCTTGGGGACAAATGGATACTTTTTATAGGTCGA
GGAGACTAA
Protein sequenceShow/hide protein sequence
MVVAPSNDQLNVVVREVGIEGAQWRLSKTEKCTFQAAYLESEAKTWLGFVKLRLLPTTNDSTVSRDRVLLVFAILRSLSIDVGKVISSEIHNCWRKKDDKLFFPNTITML
CNRAGVPTTPEDVILIEKGIIDTPNLARLQRTQEARQGGLPYAAFPIFPDDLLNPWIPRHQSKIEEGKDVGRALILFEYFCCSRIPDPTWSSLRQEDSEQCLVLHDAQVK
VEGSVGLSVLMELCYDQCFEFSRKAHALVQFSNNLQVTALVLTQSKFIHALSYSGSIKSNATKTTCNALACSTWIFPHALLVMDLSCCSLVSPVSSPSSLGDKWILFIGR
GD