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Spg024486 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024486
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:16301198..16303309
RNA-Seq ExpressionSpg024486
SyntenySpg024486
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.1e-1855.21Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTS +SS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-1655Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS +SS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]4.4e-1248.98Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAK
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTST+SS ++SS +    +  +H+V   FN+       +  DDV WLHA+FRAK
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAK

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-1448.18Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTS +   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLA
        LHA+FRAK A
Subjt:  LHAIFRAKLA

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-1655Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS +SS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein5.3e-1955.21Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILS RLYGTVCTQV+IELP+PDTLPTS +SS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

A0A5A7VMG9 Reverse transcriptase5.0e-1755Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS +SS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.2e-1248.98Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAK
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTST+SS ++SS +    +  +H+V   FN+       +  DDV WLHA+FRAK
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAK

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.3e-1448.18Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTS +   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLA
        LHA+FRAK A
Subjt:  LHAIFRAKLA

A0A5D3DX39 Reverse transcriptase5.0e-1755Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS +SS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTAAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTAAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAAGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSTKSSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA