CuGenDBv2

Gene ID	Spg024508
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase TRAIP-like
Genome location	scaffold12:18778774..18785028
RNA-Seq Expression	Spg024508
Synteny	Spg024508
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036726 - GTP1/OBG domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7013762.1 hypothetical protein SDJN02_23929 [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L     + G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

XP_023006548.1 uncharacterized protein LOC111499239 isoform X1 [Cucurbita maxima]

4.0e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L     + G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

XP_023006549.1 uncharacterized protein LOC111499239 isoform X2 [Cucurbita maxima]

4.0e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L     + G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

XP_023547669.1 uncharacterized protein LOC111806541 isoform X1 [Cucurbita pepo subsp. pepo]

4.0e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L       G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

XP_023547670.1 uncharacterized protein LOC111806541 isoform X2 [Cucurbita pepo subsp. pepo]

4.0e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L       G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

TrEMBL top hits

e value

%identity

Alignment

A0A5D3CNI4 Putative GTP-binding protein OBGC2 isoform X1

2.1e-06

87.88

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Query:  PQGNVVKRKRGKLLVDLVHPGDEVLVARGGQGG
        P G VVKRKRGKLL DLVHPGDE+LVARGGQGG
Subjt:  PQGNVVKRKRGKLLVDLVHPGDEVLVARGGQGG

A0A6J1H2X0 uncharacterized protein LOC111459984 isoform X2

2.5e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L       G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

A0A6J1H385 uncharacterized protein LOC111459984 isoform X1

2.5e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L       G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

A0A6J1L0F5 uncharacterized protein LOC111499239 isoform X2

1.9e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L     + G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

A0A6J1L583 uncharacterized protein LOC111499239 isoform X1

1.9e-07

45.57

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Query:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC
        +CK    A +V   +  +  VGDANDSMLA KP DWVE+DPELLRSEV+RLE++   L     + G+  K  +    +C
Subjt:  LCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWC

SwissProt top hits

e value

%identity

Alignment

Q851Q6 Probable GTP-binding protein OBGC2

4.2e-07

75.76

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Query:  PQGNVVKRKRGKLLVDLVHPGDEVLVARGGQGG
        P G VVKRK+G +L DL HPGDEV+VARGGQGG
Subjt:  PQGNVVKRKRGKLLVDLVHPGDEVLVARGGQGG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTCTACACGCGAACAGGCAGGCGATGTGGGTTCGTCCTTGCGTTTTCAGAAGTCCAGCAACCTTGGGCTTGTGTAAGTGTCGTGCAGAGGCTGTGGAGGTTGTGGG
TGCTTGGGCTCTCGCGAATCTTGTGGGAGATGCAAATGATTCGATGCTTGCTAACAAACCGGTCGATTGGGTTGAGAGAGATCCGGAGTTGTTGAGAAGTGAGGTGAAAA
GGCTGGAGATAAGGTCTCGGTGCTTAATTCGACATTGGAGCAATATGGGAAGGATCTCAAAAAGCTCAGTGAGGAGTGATGCCTGGTGCATTCAGAGTTGTCGCTATTCA
CCATTTGTGGGTTCTCAAGTGTTAGTTGTCGTGGGTGTTGTGTCGTTCATGAATTCACCCTCTATTGAACGCTATGCGAGTTCATGGTTCACTGTTCGTGTTTGGTGTGG
GAGTTGTAGTTCATGGGTTCATCGTCCATCACTCCTTGTGGAAGTCATGAGTACCAGATTTGAAATCGTGGATAGCAAATCTAAGGTGTGTTCATTTGTGGCTGTGGATA
GTTTAGGGCAAAGAGTAGATGCGTGTAGTGGTGAAGGTTTATATTTTGAATGGATAGATATAGCTTCTAGACTCGAAACACGTCGGTGTCGTGGTTGGCGTATGGCACCA
CAACAGAGGCCAGAAGAAGGACCACAAGGTAATGTTGTAAAACGTAAAAGAGGAAAATTGTTGGTTGATCTTGTGCATCCAGGCGACGAGGTTCTTGTTGCTAGAGGAGG
ACAAGGAGGGGGGATGGGATGGGTGAGTGCTTCTTCGCCCCTCCCTCGGATTAAGCAGCAGAAGTGGCACCAACAACACACTAACTGCAGCCCCTTGCATGAGGAATATT
AA

mRNA sequence

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Protein sequence

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MILHANRQAMWVRPCVFRSPATLGLCKCRAEAVEVVGAWALANLVGDANDSMLANKPVDWVERDPELLRSEVKRLEIRSRCLIRHWSNMGRISKSSVRSDAWCIQSCRYS
PFVGSQVLVVVGVVSFMNSPSIERYASSWFTVRVWCGSCSSWVHRPSLLVEVMSTRFEIVDSKSKVCSFVAVDSLGQRVDACSGEGLYFEWIDIASRLETRRCRGWRMAP
QQRPEEGPQGNVVKRKRGKLLVDLVHPGDEVLVARGGQGGGMGWVSASSPLPRIKQQKWHQQHTNCSPLHEEY

Spg024508 (gene) of Sponge gourd (cylindrica) v1 genome