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Spg024509 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024509
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:19258614..19263563
RNA-Seq ExpressionSpg024509
SyntenySpg024509
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.7e-1166.18Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVH
        LF LSY EGTKRPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SS+      W+ L  + VH
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVH

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-0947.42Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGP
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS++ +           G    +  DDV WLHA+FR K  GGP
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGP

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-1243.75Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ----------------------------
        LFGL Y EGTKRPRGNR+SLQT +L KT                 VEIELPVPDTLPTSAESS S+SS+  +                            
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ----------------------------

Query:  -EGQWVSLEEDDVHWLHAIFRTKLAGGP
          G    +  D+V WLHA+F  K AGGP
Subjt:  -EGQWVSLEEDDVHWLHAIFRTKLAGGP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.0e-1139.74Show/hide
Query:  EIAQAKAVIAESEFNMPTSGFLFGLSYTEGTK----------------------RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQ--
        E   AK  IAES  N      LFGLSY E  +                       PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SS+  +  
Subjt:  EIAQAKAVIAESEFNMPTSGFLFGLSYTEGTK----------------------RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQ--

Query:  ------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGP
                                EG    +  DD+ WLHA+F  K AG P
Subjt:  ------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGP

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]5.6e-1054.55Show/hide
Query:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVHWLHAIFRTKLAGGP
        RPRGNR SLQT KL KT                 VEIELPVPDTLPTSAES  S+S S         +  DDV WLHA+FR K AGGP
Subjt:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVHWLHAIFRTKLAGGP

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein8.4e-1266.18Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVH
        LF LSY EGTKRPRGNR SLQT KL KTVEIELP+PDTLPT AES  S+SS+      W+ L  + VH
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVH

A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.9e-1343.75Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ----------------------------
        LFGL Y EGTKRPRGNR+SLQT +L KT                 VEIELPVPDTLPTSAESS S+SS+  +                            
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ----------------------------

Query:  -EGQWVSLEEDDVHWLHAIFRTKLAGGP
          G    +  D+V WLHA+F  K AGGP
Subjt:  -EGQWVSLEEDDVHWLHAIFRTKLAGGP

A0A5A7UAH6 CCHC-type domain-containing protein4.9e-1239.74Show/hide
Query:  EIAQAKAVIAESEFNMPTSGFLFGLSYTEGTK----------------------RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQ--
        E   AK  IAES  N      LFGLSY E  +                       PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SS+  +  
Subjt:  EIAQAKAVIAESEFNMPTSGFLFGLSYTEGTK----------------------RPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMFQ--

Query:  ------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGP
                                EG    +  DD+ WLHA+F  K AG P
Subjt:  ------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGP

A0A5A7VIY9 Uncharacterized protein1.3e-0940.98Show/hide
Query:  LSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ--------------------------EGQWV
        +S  E  + PRGNRSSLQT +L KT                 VEIELPVPDTLPTSAES  S+SS+  +                          EG   
Subjt:  LSYTEGTKRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQ--------------------------EGQWV

Query:  SLEEDDVHWLHAIFRTKLAGGP
         +  DDV WLH +FR K+AGGP
Subjt:  SLEEDDVHWLHAIFRTKLAGGP

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.7e-1054.55Show/hide
Query:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVHWLHAIFRTKLAGGP
        RPRGNR SLQT KL KT                 VEIELPVPDTLPTSAES  S+S S         +  DDV WLHA+FR K AGGP
Subjt:  RPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSMFQEGQWVSLEEDDVHWLHAIFRTKLAGGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCAGTTTCGAGTCGTCCGCGGGTCGGCAAGTTGCCTAAGGCACCCTATATCGACTATAGGGTTATAGGTTGCATTCG
TGAATTATCTATGTCGGAGTCGAGTTACAGAAATGCACATAACGGAGAGGGAATAGCCCTAGAGATTGATTCGGGCCCAATGGGCCTTTGTGGGCTTGTTTCTTCTCTAG
GCTCTTGTCATTCTGACTTTCTTAGAGCTAGGTCCAAATTCACCCATAACATTAACCCCCTTTTAAGTTTGTGCTCGGCCTCGGCAAGATGTGCTTGGCCTCGGCCTCAA
CCAGGTGAGCTTGACTCAGATGAAGTGTTTGGGCTCAAGCCAGATGAGATGAGGCGAGGTAGACTCGGAAGTCCGGGCTCGCGTGATGGGCTCAAGCCAGACGAGGAAAT
AGCTCAAGCAAAGGCAGTCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGT
CGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAATGTTT
CAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCG
mRNA sequenceShow/hide mRNA sequence
ATGAAATGCGACCGCATTTCTGGAAAAACAGAGGCAGTTTCGAGTCGTCCGCGGGTCGGCAAGTTGCCTAAGGCACCCTATATCGACTATAGGGTTATAGGTTGCATTCG
TGAATTATCTATGTCGGAGTCGAGTTACAGAAATGCACATAACGGAGAGGGAATAGCCCTAGAGATTGATTCGGGCCCAATGGGCCTTTGTGGGCTTGTTTCTTCTCTAG
GCTCTTGTCATTCTGACTTTCTTAGAGCTAGGTCCAAATTCACCCATAACATTAACCCCCTTTTAAGTTTGTGCTCGGCCTCGGCAAGATGTGCTTGGCCTCGGCCTCAA
CCAGGTGAGCTTGACTCAGATGAAGTGTTTGGGCTCAAGCCAGATGAGATGAGGCGAGGTAGACTCGGAAGTCCGGGCTCGCGTGATGGGCTCAAGCCAGACGAGGAAAT
AGCTCAAGCAAAGGCAGTCATAGCAGAATCTGAGTTCAACATGCCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGT
CGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAATGTTT
CAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCG
Protein sequenceShow/hide protein sequence
MKCDRISGKTEAVSSRPRVGKLPKAPYIDYRVIGCIRELSMSESSYRNAHNGEGIALEIDSGPMGLCGLVSSLGSCHSDFLRARSKFTHNINPLLSLCSASARCAWPRPQ
PGELDSDEVFGLKPDEMRRGRLGSPGSRDGLKPDEEIAQAKAVIAESEFNMPTSGFLFGLSYTEGTKRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSMF
QEGQWVSLEEDDVHWLHAIFRTKLAGGP