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Spg024526 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024526
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:15619015..15623940
RNA-Seq ExpressionSpg024526
SyntenySpg024526
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.2e-1051.65Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL
        PRGNR SLQT +L KT                 VEIELPV DTLP SAESS S+S SA        + EDDVCWLH +F+ K  GGPGG +
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-1147.52Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ ++           G    +  DDVCWLHA+F+ K  GGPGG 
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA

Query:  L
        +
Subjt:  L

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.1e-1146Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ--------------------------QGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SS+ ++                          +G    +  DD+CWLHA+F  K  G PGG +
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ--------------------------QGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.0e-1253.68Show/hide
Query:  MLRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL
        ++RPRGNR SLQT KL KT                 VEIELPVPDTLPTSAES  S+S S+ I +G       DDVCWLHA+F+ K  GGPGG +
Subjt:  MLRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-1147.52Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ ++           G    +  DDVCWLHA+F+ K  GGPGG 
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA

Query:  L
        +
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase7.0e-1247.52Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ ++           G    +  DDVCWLHA+F+ K  GGPGG 
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA

Query:  L
        +
Subjt:  L

A0A5A7UAH6 CCHC-type domain-containing protein5.4e-1246Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ--------------------------QGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS S+SS+ ++                          +G    +  DD+CWLHA+F  K  G PGG +
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ--------------------------QGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL

A0A5D3BAD1 Retrotrans_gag domain-containing protein4.9e-1353.68Show/hide
Query:  MLRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL
        ++RPRGNR SLQT KL KT                 VEIELPVPDTLPTSAES  S+S S+ I +G       DDVCWLHA+F+ K  GGPGG +
Subjt:  MLRPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL

A0A5D3BSA6 Retrotrans_gag domain-containing protein6.0e-1151.65Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL
        PRGNR SLQT +L KT                 VEIELPV DTLP SAESS S+S SA        + EDDVCWLH +F+ K  GGPGG +
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGAL

A0A5D3D150 Reverse transcriptase7.0e-1247.52Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA
        PRGNR SLQT +L KT                 VEIELP+PDTLPTSAESS S+SS+ ++           G    +  DDVCWLHA+F+ K  GGPGG 
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSAIQQ----------GQQVSLEEDDVCWLHAIFQTKLVGGPGGA

Query:  L
        +
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTC
CAGTTCAAGCTCCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTTCCAGACTAAGCTAGTAGGTGGTCCGG
GAGGGGCATTGTTCCAAAAATCAATCATTTTAACCACTTTTGAAACCATTAAAGAGTTATACAAAATAGATACAGTGAGAGCTATTCGGCCCCGTGGATACGATAAATAC
TTATCACTTGCTGCGGATTGTATAACTAGGGCACGCATGCCAATTTCTTGGAGAGGTCAGCCTCCTCAGCCTATAAAAAGCATCCATCTGTCCAAGAGGGATGGAGACGA
GGAGGAAGGCAAGACCAGAGAGCAAGGAGAAGGAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTC
CAGTTCAAGCTCCAGTTCAGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTTCCAGACTAAGCTAGTAGGTGGTCCGG
GAGGGGCATTGTTCCAAAAATCAATCATTTTAACCACTTTTGAAACCATTAAAGAGTTATACAAAATAGATACAGTGAGAGCTATTCGGCCCCGTGGATACGATAAATAC
TTATCACTTGCTGCGGATTGTATAACTAGGGCACGCATGCCAATTTCTTGGAGAGGTCAGCCTCCTCAGCCTATAAAAAGCATCCATCTGTCCAAGAGGGATGGAGACGA
GGAGGAAGGCAAGACCAGAGAGCAAGGAGAAGGAAGGTAG
Protein sequenceShow/hide protein sequence
MLRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAIFQTKLVGGPGGALFQKSIILTTFETIKELYKIDTVRAIRPRGYDKY
LSLAADCITRARMPISWRGQPPQPIKSIHLSKRDGDEEEGKTREQGEGR