; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024529 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024529
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:16584654..16586942
RNA-Seq ExpressionSpg024529
SyntenySpg024529
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1348.8Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTS+ESS S+SSTW +                     QG +
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL

Query:  -------EEDDVCWLHAISLTKLAG
                 DDVCWLHAI   K AG
Subjt:  -------EEDDVCWLHAISLTKLAG

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.9e-1162.12Show/hide
Query:  VILRSSYIPLLTLSVLRDNDAVV------------SAGRAPLHRRASKRWLYWACPTQRRSVMLVE
        V+    YI LLTLSVLRDN+ VV            SAGR PLHRR SKRWLYWACPTQR  VMLV+
Subjt:  VILRSSYIPLLTLSVLRDNDAVV------------SAGRAPLHRRASKRWLYWACPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.0e-2259.65Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD
        L TLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTS+ESS S+S +    G +  DD
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD

Query:  VCWLHAISLTKLAG
        VCWLH +   K  G
Subjt:  VCWLHAISLTKLAG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.0e-2259.65Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD
        L TLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTS+ESS S+S +    G +  DD
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD

Query:  VCWLHAISLTKLAG
        VCWLH +   K  G
Subjt:  VCWLHAISLTKLAG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1348.8Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTS+ESS S+SSTW +                     QG +
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL

Query:  -------EEDDVCWLHAISLTKLAG
                 DDVCWLHAI   K AG
Subjt:  -------EEDDVCWLHAISLTKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase9.3e-1448.8Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTS+ESS S+SSTW +                     QG +
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL

Query:  -------EEDDVCWLHAISLTKLAG
                 DDVCWLHAI   K AG
Subjt:  -------EEDDVCWLHAISLTKLAG

A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.3e-1162.12Show/hide
Query:  VILRSSYIPLLTLSVLRDNDAVV------------SAGRAPLHRRASKRWLYWACPTQRRSVMLVE
        V+    YI LLTLSVLRDN+ VV            SAGR PLHRR SKRWLYWACPTQR  VMLV+
Subjt:  VILRSSYIPLLTLSVLRDNDAVV------------SAGRAPLHRRASKRWLYWACPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein1.4e-2259.65Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD
        L TLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTS+ESS S+S +    G +  DD
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD

Query:  VCWLHAISLTKLAG
        VCWLH +   K  G
Subjt:  VCWLHAISLTKLAG

A0A5D3BG85 Uncharacterized protein1.4e-2259.65Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD
        L TLSVLRDNDAVVSAG            RAPLHRR SKRWLYWACPT RRSVML          VEIEL VPDTLPTS+ESS S+S +    G +  DD
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRASKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDD

Query:  VCWLHAISLTKLAG
        VCWLH +   K  G
Subjt:  VCWLHAISLTKLAG

A0A5D3BTP3 Reverse transcriptase9.3e-1448.8Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTS+ESS S+SSTW +                     QG +
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQ---------------------QGSL

Query:  -------EEDDVCWLHAISLTKLAG
                 DDVCWLHAI   K AG
Subjt:  -------EEDDVCWLHAISLTKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGTCTCGACGCTGCGACGGCTCCAGGGGCAGTTTGGTCATTTTACGCTCCAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAATGATGCTGTCGT
GAGTGCTGGGCGAGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTTC
CTGATACATTGCCAACGTCTTCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGGTCAACAGGGATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTA
ACTAAGCTAGCAGGTCGATATCTTGTAAAGCTAAGGTTACAAGAGAACTCACCTGGCGAGATGCTGTCTAAGGCTGGAGGTATTTACGATGACGGTTTACGGAACACCTC
CTACCTGGGCATCGATTTGGTACTTGAGTTAGGTGAACCCAGTTTTATGAGCATGCGTGAGGGATACATGCGAGTGGGGGCGTCCTATGCAAATGAGTTTGCAGAAGACC
AGGATCGAGAAAAGTCACTCTTGCTTTATAACGTCGTTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACGTCTCGACGCTGCGACGGCTCCAGGGGCAGTTTGGTCATTTTACGCTCCAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAATGATGCTGTCGT
GAGTGCTGGGCGAGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTTC
CTGATACATTGCCAACGTCTTCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGGTCAACAGGGATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTA
ACTAAGCTAGCAGGTCGATATCTTGTAAAGCTAAGGTTACAAGAGAACTCACCTGGCGAGATGCTGTCTAAGGCTGGAGGTATTTACGATGACGGTTTACGGAACACCTC
CTACCTGGGCATCGATTTGGTACTTGAGTTAGGTGAACCCAGTTTTATGAGCATGCGTGAGGGATACATGCGAGTGGGGGCGTCCTATGCAAATGAGTTTGCAGAAGACC
AGGATCGAGAAAAGTCACTCTTGCTTTATAACGTCGTTCACTGA
Protein sequenceShow/hide protein sequence
MATSRRCDGSRGSLVILRSSYIPLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRSVMLVEIELPVPDTLPTSSESSSSSSSTWGQQGSLEEDDVCWLHAISL
TKLAGRYLVKLRLQENSPGEMLSKAGGIYDDGLRNTSYLGIDLVLELGEPSFMSMREGYMRVGASYANEFAEDQDREKSLLLYNVVH