CuGenDBv2

Gene ID	Spg024531
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	scaffold12:15375046..15375417
RNA-Seq Expression	Spg024531
Synteny	Spg024531
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0050821 - protein stabilization (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0046872 - metal ion binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0042301 - phosphate ion binding (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0008289 - lipid binding (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR038662 - F1F0 ATP synthase subunit C superfamily IPR035921 - F/V-ATP synthase subunit C superfamily IPR002379 - V-ATPase proteolipid subunit C-like domain IPR000454 - ATP synthase, F0 complex, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

AHM91193.1 ATP synthase CF0 subunit III [Lagenaria siceraria]

9.4e-16

51.18

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR--------------------------------------------------
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR                                                  
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR--------------------------------------------------

Query:  -AFTP-------TLLIRWDNNLWEGLI
         AF+         LLIRWDNNLWEGLI
Subjt:  -AFTP-------TLLIRWDNNLWEGLI

GAU33986.1 hypothetical protein TSUD_212470 [Trifolium subterraneum]

1.9e-16

92.86

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAE KIR FTPT+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL

GAY64713.1 hypothetical protein CUMW_235570 [Citrus unshiu]

7.2e-16

91.07

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR  TP +
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL

QXO02687.1 ATP synthase CF0 subunit III [Chamaegastrodia inverta]

2.7e-15

75.68

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR-------AFTPTLLIRWDNNLWEG
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPE EGKIR       AF   L I    NLW G
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR-------AFTPTLLIRWDNNLWEG

VDD24681.1 unnamed protein product, partial [Brassica rapa]

1.6e-15

78.57

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLIRW-----DNNLW
        MNP +SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+ +      NNLW
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLIRW-----DNNLW

TrEMBL top hits

e value

%identity

Alignment

A0A2H5QJF0 ATP-synt_C domain-containing protein

3.5e-16

91.07

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR  TP +
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL

A0A2Z6MNG2 ATP-synt_C domain-containing protein

9.2e-17

92.86

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAE KIR FTPT+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTL

A0A3P6DME3 ATP-synt_C domain-containing protein (Fragment)

7.8e-16

78.57

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLIRW-----DNNLW
        MNP +SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+ +      NNLW
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLIRW-----DNNLW

A0A5D3DWT8 ATP synthase CF0 C subunit (Plastid)

1.7e-15

85.96

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLL
        MNP ISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGI RQPEAEGKIRA  P ++
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLL

X2F1L3 ATP synthase subunit c, chloroplastic

4.6e-16

51.18

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR--------------------------------------------------
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR                                                  
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR--------------------------------------------------

Query:  -AFTP-------TLLIRWDNNLWEGLI
         AF+         LLIRWDNNLWEGLI
Subjt:  -AFTP-------TLLIRWDNNLWEGLI

SwissProt top hits

e value

%identity

Alignment

A4QJA2 ATP synthase subunit c, chloroplastic

1.8e-17

89.66

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI

A4QJI6 ATP synthase subunit c, chloroplastic

1.8e-17

89.66

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI

Q3V547 ATP synthase subunit c, chloroplastic

1.8e-17

89.66

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI

Q4FGF2 ATP synthase subunit c, chloroplastic

1.8e-17

89.66

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI

Q85FN2 ATP synthase subunit c, chloroplastic

1.8e-17

89.66

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI
        MNP ISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.7e-18

87.93

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Query:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI
        MNP +SAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIR    TLL+
Subjt:  MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLI

Sequences

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CDS sequence

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atgaatccacggatttctgccgcttccgttattgctgctgggttggccgttgggcttgcttctattggacctggggttggtcaaggtactgctgcgggccaagctgtaga
agggatcgcgagacaacccgaggcggagggaaaaatccgagctttcactcctacattacttattcgttgggacaataacctatgggaaggattgatttga

mRNA sequence

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Protein sequence

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MNPRISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRAFTPTLLIRWDNNLWEGLI

Spg024531 (gene) of Sponge gourd (cylindrica) v1 genome