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Spg024532 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024532
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:15870191..15873048
RNA-Seq ExpressionSpg024532
SyntenySpg024532
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-1150.49Show/hide
Query:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG
        T PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS S SS+  +   +SV +E          DDVCWLHA+FR K   GPG
Subjt:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG

Query:  GVV
        G V
Subjt:  GVV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]8.4e-1251.55Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQEGQSVSLEEDDVCWLHAIFRTKLADGPGGVVTVTLLR
        PRG R SLQT +L KT                 VEIELPVPDTLPTSAES  S S ST        +  DDVCWLHA+FR K A GPGG VT  + +
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQEGQSVSLEEDDVCWLHAIFRTKLADGPGGVVTVTLLR

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]7.1e-1144.07Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ--------------------------EGQSVSLEEDDVCW
        PRG RSSLQT EL KT                 VEIELPVPDTLPTSAES  S SS+  +                          EG +  +  DDVCW
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ--------------------------EGQSVSLEEDDVCW

Query:  LHAIFRTKLADGPGGVVT
        LH +FR K+A GPGG VT
Subjt:  LHAIFRTKLADGPGGVVT

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.9e-1272.31Show/hide
Query:  QVESKALFGMVGKIIQFPTT-----PRGIRSSLQTRELAKTVEIELPVPDTLPTSAESSRSRSSS
        QVES+ALFGMV K+IQ+PTT     PRG R S QT +L KTVEIELPVPDTLPTSAESS S SS+
Subjt:  QVESKALFGMVGKIIQFPTT-----PRGIRSSLQTRELAKTVEIELPVPDTLPTSAESSRSRSSS

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-1150.49Show/hide
Query:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG
        T PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS S SS+  +   +SV +E          DDVCWLHA+FR K   GPG
Subjt:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG

Query:  GVV
        G V
Subjt:  GVV

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.5e-1150.49Show/hide
Query:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG
        T PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS S SS+  +   +SV +E          DDVCWLHA+FR K   GPG
Subjt:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG

Query:  GVV
        G V
Subjt:  GVV

A0A5A7VIY9 Uncharacterized protein3.4e-1144.07Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ--------------------------EGQSVSLEEDDVCW
        PRG RSSLQT EL KT                 VEIELPVPDTLPTSAES  S SS+  +                          EG +  +  DDVCW
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ--------------------------EGQSVSLEEDDVCW

Query:  LHAIFRTKLADGPGGVVT
        LH +FR K+A GPGG VT
Subjt:  LHAIFRTKLADGPGGVVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein4.1e-1251.55Show/hide
Query:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQEGQSVSLEEDDVCWLHAIFRTKLADGPGGVVTVTLLR
        PRG R SLQT +L KT                 VEIELPVPDTLPTSAES  S S ST        +  DDVCWLHA+FR K A GPGG VT  + +
Subjt:  PRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQEGQSVSLEEDDVCWLHAIFRTKLADGPGGVVTVTLLR

A0A5D3BET3 Uncharacterized protein1.4e-1272.31Show/hide
Query:  QVESKALFGMVGKIIQFPTT-----PRGIRSSLQTRELAKTVEIELPVPDTLPTSAESSRSRSSS
        QVES+ALFGMV K+IQ+PTT     PRG R S QT +L KTVEIELPVPDTLPTSAESS S SS+
Subjt:  QVESKALFGMVGKIIQFPTT-----PRGIRSSLQTRELAKTVEIELPVPDTLPTSAESSRSRSSS

A0A5D3D150 Reverse transcriptase1.5e-1150.49Show/hide
Query:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG
        T PRG R SLQT EL KT                 VEIELP+PDTLPTSAESS S SS+  +   +SV +E          DDVCWLHA+FR K   GPG
Subjt:  TTPRGIRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSRSSSTFQ-EGQSVSLE---------EDDVCWLHAIFRTKLADGPG

Query:  GVV
        G V
Subjt:  GVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACTCACTTCCCTAAGTAAACCATTCATGCAGTGGCAAACCATGGGTGTCATTGATGCCCCTGGTTACTCATTAATGGGTTTTGGAATGGAAAACAGAGCACAGGA
TTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCAAGCATTCTGGGGTGTACAAGTTGAATCAAAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAAT
TTCCTACAACGCCAAGAGGAATTAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGT
TCCAGATCAAGGTCCAGTTCAACGTTTCAGGAGGGTCAATCGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGATGGTCC
GGGAGGGGTTGTGACGGTGACACTTTTGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATACTCACTTCCCTAAGTAAACCATTCATGCAGTGGCAAACCATGGGTGTCATTGATGCCCCTGGTTACTCATTAATGGGTTTTGGAATGGAAAACAGAGCACAGGA
TTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCAAGCATTCTGGGGTGTACAAGTTGAATCAAAAGCTCTATTTGGTATGGTTGGAAAGATTATTCAAT
TTCCTACAACGCCAAGAGGAATTAGGTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGT
TCCAGATCAAGGTCCAGTTCAACGTTTCAGGAGGGTCAATCGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGATGGTCC
GGGAGGGGTTGTGACGGTGACACTTTTGAGATAG
Protein sequenceShow/hide protein sequence
MILTSLSKPFMQWQTMGVIDAPGYSLMGFGMENRAQDFRAKQEDLWFSLVFQAFWGVQVESKALFGMVGKIIQFPTTPRGIRSSLQTRELAKTVEIELPVPDTLPTSAES
SRSRSSSTFQEGQSVSLEEDDVCWLHAIFRTKLADGPGGVVTVTLLR