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Spg024533 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024533
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:19000861..19004066
RNA-Seq ExpressionSpg024533
SyntenySpg024533
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1350.48Show/hide
Query:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL
        W  R G +  F +      VEIELP+PD LPTSAESSRS+SSTW+ELY ES        VI QT+ CQ C   SA+       +  DDVCWLHAI   K 
Subjt:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL

Query:  AGVQG
        AG  G
Subjt:  AGVQG

KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1053.09Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESV  +    +   + +A     +G    +  DDVCWLHAI   K AG  G
Subjt:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.7e-1140.65Show/hide
Query:  MAESGFNLSISGFLFGLSYTGRTKRAQNFRANQKDLWFSLVVQAFWGVHVESEALFGHFWTNR--LGISFLFLQVEIELPMPDTLPTSAESSRSSSSTWV
        +AESG N      LFGLSY     R ++ R   K            G  V S+AL      NR  L    L   VEIELP+PDTLPTSAESS+S+SSTW+
Subjt:  MAESGFNLSISGFLFGLSYTGRTKRAQNFRANQKDLWFSLVVQAFWGVHVESEALFGHFWTNR--LGISFLFLQVEIELPMPDTLPTSAESSRSSSSTWV

Query:  ELYIESVIFQTELCQDC---TSCSAFQQGQQVSLEEDDVCWLHAISLTKLAGVQG
        ELY ESV  +    +      +     +G    +  DD+CWLHA+   K AG  G
Subjt:  ELYIESVIFQTELCQDC---TSCSAFQQGQQVSLEEDDVCWLHAISLTKLAGVQG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-1350.48Show/hide
Query:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL
        W  R G +  F +      VEIELP+PD LPTSAESSRS+SSTW+ELY ES        VI QT+ CQ C   SA+       +  DDVCWLHAI   K 
Subjt:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL

Query:  AGVQG
        AG  G
Subjt:  AGVQG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1053.09Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESV  +    +   + +A     +G    +  DDVCWLHAI   K AG  G
Subjt:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.4e-1350.48Show/hide
Query:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL
        W  R G +  F +      VEIELP+PD LPTSAESSRS+SSTW+ELY ES        VI QT+ CQ C   SA+       +  DDVCWLHAI   K 
Subjt:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL

Query:  AGVQG
        AG  G
Subjt:  AGVQG

A0A5A7T9P7 Gag/pol protein8.4e-1153.09Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESV  +    +   + +A     +G    +  DDVCWLHAI   K AG  G
Subjt:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG

A0A5A7UAH6 CCHC-type domain-containing protein1.3e-1140.65Show/hide
Query:  MAESGFNLSISGFLFGLSYTGRTKRAQNFRANQKDLWFSLVVQAFWGVHVESEALFGHFWTNR--LGISFLFLQVEIELPMPDTLPTSAESSRSSSSTWV
        +AESG N      LFGLSY     R ++ R   K            G  V S+AL      NR  L    L   VEIELP+PDTLPTSAESS+S+SSTW+
Subjt:  MAESGFNLSISGFLFGLSYTGRTKRAQNFRANQKDLWFSLVVQAFWGVHVESEALFGHFWTNR--LGISFLFLQVEIELPMPDTLPTSAESSRSSSSTWV

Query:  ELYIESVIFQTELCQDC---TSCSAFQQGQQVSLEEDDVCWLHAISLTKLAGVQG
        ELY ESV  +    +      +     +G    +  DD+CWLHA+   K AG  G
Subjt:  ELYIESVIFQTELCQDC---TSCSAFQQGQQVSLEEDDVCWLHAISLTKLAGVQG

A0A5D3BTP3 Reverse transcriptase1.4e-1350.48Show/hide
Query:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL
        W  R G +  F +      VEIELP+PD LPTSAESSRS+SSTW+ELY ES        VI QT+ CQ C   SA+       +  DDVCWLHAI   K 
Subjt:  WTNRLGISFLFLQ------VEIELPMPDTLPTSAESSRSSSSTWVELYIES--------VIFQTELCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKL

Query:  AGVQG
        AG  G
Subjt:  AGVQG

A0A5D3DR18 Gag/pol protein8.4e-1153.09Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG
        VEIELP+PDTLPTSAESS S+SSTW+ELY ESV  +    +   + +A     +G    +  DDVCWLHAI   K AG  G
Subjt:  VEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTELCQDCTSCSAFQ---QGQQVSLEEDDVCWLHAISLTKLAGVQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGTTCAACCTGTCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGAGCACAAAATTTTCGTGCAAACCAAAAGGATCTCTG
GTTTTCTCTGGTTGTTCAAGCATTCTGGGGTGTACACGTTGAATCAGAAGCTCTATTTGGGCATTTCTGGACAAATCGGTTGGGAATCTCGTTTTTATTTCTTCAGGTAG
AGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTGTTATTTTCCAAACCGAG
TTATGTCAGGACTGCACTTCATGTTCAGCGTTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGG
AGTTCAGGGTGTTCCGAATCCTATGATCAGACCCTTCGAAGGGATGGTTGCGCCAGGGCAACACGCAGGCGGACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGTTCAACCTGTCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGAGCACAAAATTTTCGTGCAAACCAAAAGGATCTCTG
GTTTTCTCTGGTTGTTCAAGCATTCTGGGGTGTACACGTTGAATCAGAAGCTCTATTTGGGCATTTCTGGACAAATCGGTTGGGAATCTCGTTTTTATTTCTTCAGGTAG
AGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTGTTATTTTCCAAACCGAG
TTATGTCAGGACTGCACTTCATGTTCAGCGTTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGG
AGTTCAGGGTGTTCCGAATCCTATGATCAGACCCTTCGAAGGGATGGTTGCGCCAGGGCAACACGCAGGCGGACCATAG
Protein sequenceShow/hide protein sequence
MAESGFNLSISGFLFGLSYTGRTKRAQNFRANQKDLWFSLVVQAFWGVHVESEALFGHFWTNRLGISFLFLQVEIELPMPDTLPTSAESSRSSSSTWVELYIESVIFQTE
LCQDCTSCSAFQQGQQVSLEEDDVCWLHAISLTKLAGVQGVPNPMIRPFEGMVAPGQHAGGP