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Spg024535 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024535
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription initiation factor TFIID subunit 2
Genome locationscaffold12:20011003..20016469
RNA-Seq ExpressionSpg024535
SyntenySpg024535
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019958.1 Transcription initiation factor TFIID subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-1238.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFRNFNS  QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
XP_022137326.1 transcription initiation factor TFIID subunit 2 [Momordica charantia]3.1e-1248.11Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DRVFELIRPFRNFNSM QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQ
        + +LCQ
Subjt:  ITQLCQ
XP_022923890.1 transcription initiation factor TFIID subunit 2 [Cucurbita moschata]8.9e-1238.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFRNFNS  QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
XP_023000821.1 transcription initiation factor TFIID subunit 2 [Cucurbita maxima]8.9e-1238.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFRNFNS  QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
XP_023519716.1 transcription initiation factor TFIID subunit 2 [Cucurbita pepo subsp. pepo]8.9e-1238.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFRNFNS  QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
TrEMBL top hitse value%identityAlignment
A0A0A0LQC8 Transcription initiation factor TFIID subunit 22.8e-1138.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEI--LACGSKRAGKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFR+FNSM QVRIEATR+LLD EYH NGIDATLL  I  L   +   G++     
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEI--LACGSKRAGKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
A0A5D3BGQ6 Transcription initiation factor TFIID subunit 21.4e-1037.68Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEI--LACGSKRAGKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFR+FNS+ QVRIEATR+LLD EYH NGIDATLL  I  L   +   G+      
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEI--LACGSKRAGKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
A0A6J1C691 Transcription initiation factor TFIID subunit 21.5e-1248.11Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DRVFELIRPFRNFNSM QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQ
        + +LCQ
Subjt:  ITQLCQ
A0A6J1ED82 Transcription initiation factor TFIID subunit 24.3e-1238.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFRNFNS  QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
A0A6J1KGW7 Transcription initiation factor TFIID subunit 24.3e-1238.41Show/hide
Query:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL
        D+L+  Y G++     + L  ++L L   + +     DR+ ELIRPFRNFNS  QVRIEATRALLD EYH NGIDA LL  I     +++  G++  G  
Subjt:  DKLVADY-GLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLLFEILACGSKRA--GKLFFGSL

Query:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
        + +LCQ ++     D  ++     + L L G +  N++
Subjt:  ITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSI
SwissProt top hitse value%identityAlignment
Q8LPF0 Transcription initiation factor TFIID subunit 26.4e-0552.38Show/hide
Query:  DRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLL
        D + +LI PFRN +++ Q+RIE +RALLD EY   GI + LL
Subjt:  DRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLL
Arabidopsis top hitse value%identityAlignment
AT1G73960.1 TBP-associated factor 24.6e-0652.38Show/hide
Query:  DRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLL
        D + +LI PFRN +++ Q+RIE +RALLD EY   GI + LL
Subjt:  DRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNGIDATLL
AT1G73960.2 TBP-associated factor 21.5e-0452.78Show/hide
Query:  DRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNG
        D + +LI PFRN +++ Q+RIE +RALLD EY   G
Subjt:  DRVFELIRPFRNFNSMCQVRIEATRALLDREYHGNG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCTCTCTTGCAGCTCCTCCTACCATCTCACCCGCCAAGCCAAAAGCCAAATCACCCAAGGCTGCATCTCCTAAAAATCCATTCCCCAAAGTCTTCAGAGATGT
GAATTTTCAGGAACGGATGGAGATCATGAGAAAAAGAGATTTCCTGAATGAAGAGGGATTCTCTAACAGAGCAGGAGCATTGCCAGAGTTCGAACCCTCGACCAAGCAGA
TGAAAGAAGCACTTAAACTGGTGGCCAACAAGGGTGTTCAGTGGAAAGAGTCCCAGATGAAGGTGAAGACTCTAGTGCCTAGCGATCTCAAGGCAGAATCGGTAGTGTGG
CTTCACTTTCTGAAGAACCGATTGATGCCAACCACCAACGATAGCACCATATCAGTAGATAGAGTTATGCTCCTCTACTGTGTTATGAAGGGACTCTACATCAAGGAATG
GTCCTTGGCTGCAAGAGATAGTTCTTATGAGTTTCACAGTTTGGACAAACTGGTTGCTGACTATGGACTTGTACCAGATTTGCTGGAAAAGATTCTCGAAAATTTGAGTC
TCGTGCTATACCATTTCATAGATATGTATGGTCAAGAAGATGATCGTGTCTTTGAACTGATAAGACCTTTTCGAAATTTTAATTCCATGTGTCAAGTTCGAATTGAGGCA
ACCCGAGCACTTCTTGATCGTGAGTACCACGGCAATGGAATTGATGCAACATTATTATTTGAGATTTTAGCCTGTGGAAGTAAAAGAGCAGGTAAACTTTTCTTTGGATC
GCTTATCACCCAACTTTGTCAGAGGGTGAAGATAGTTCCGGGCAAGGATGAGGAGCATCATTTCTTCAAGCCTACCATTGACCTGTCCTTGATCGGGAAGCTTCAGCAGA
ATAGCATCCAAGGGAAAGACAAAGCCTCCACATCTCAGGCCACTCCACCATCAGGGCTGAACATAGCTTCTCCATCCCAGCACACTCCTTTTACAGGGCCCTCACCATCA
TCTGAAGCCCTAGCCAGTGCCTACTGTCAGCTAGATCAAATCAGGGACAACCTGAAGACTTATTGGGCATATGCAAGATTGATTAATTTTTTTCATTTACTATCTACGAG
TTTTAGGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGCCTCTCTTGCAGCTCCTCCTACCATCTCACCCGCCAAGCCAAAAGCCAAATCACCCAAGGCTGCATCTCCTAAAAATCCATTCCCCAAAGTCTTCAGAGATGT
GAATTTTCAGGAACGGATGGAGATCATGAGAAAAAGAGATTTCCTGAATGAAGAGGGATTCTCTAACAGAGCAGGAGCATTGCCAGAGTTCGAACCCTCGACCAAGCAGA
TGAAAGAAGCACTTAAACTGGTGGCCAACAAGGGTGTTCAGTGGAAAGAGTCCCAGATGAAGGTGAAGACTCTAGTGCCTAGCGATCTCAAGGCAGAATCGGTAGTGTGG
CTTCACTTTCTGAAGAACCGATTGATGCCAACCACCAACGATAGCACCATATCAGTAGATAGAGTTATGCTCCTCTACTGTGTTATGAAGGGACTCTACATCAAGGAATG
GTCCTTGGCTGCAAGAGATAGTTCTTATGAGTTTCACAGTTTGGACAAACTGGTTGCTGACTATGGACTTGTACCAGATTTGCTGGAAAAGATTCTCGAAAATTTGAGTC
TCGTGCTATACCATTTCATAGATATGTATGGTCAAGAAGATGATCGTGTCTTTGAACTGATAAGACCTTTTCGAAATTTTAATTCCATGTGTCAAGTTCGAATTGAGGCA
ACCCGAGCACTTCTTGATCGTGAGTACCACGGCAATGGAATTGATGCAACATTATTATTTGAGATTTTAGCCTGTGGAAGTAAAAGAGCAGGTAAACTTTTCTTTGGATC
GCTTATCACCCAACTTTGTCAGAGGGTGAAGATAGTTCCGGGCAAGGATGAGGAGCATCATTTCTTCAAGCCTACCATTGACCTGTCCTTGATCGGGAAGCTTCAGCAGA
ATAGCATCCAAGGGAAAGACAAAGCCTCCACATCTCAGGCCACTCCACCATCAGGGCTGAACATAGCTTCTCCATCCCAGCACACTCCTTTTACAGGGCCCTCACCATCA
TCTGAAGCCCTAGCCAGTGCCTACTGTCAGCTAGATCAAATCAGGGACAACCTGAAGACTTATTGGGCATATGCAAGATTGATTAATTTTTTTCATTTACTATCTACGAG
TTTTAGGGCATAA
Protein sequenceShow/hide protein sequence
MDASLAAPPTISPAKPKAKSPKAASPKNPFPKVFRDVNFQERMEIMRKRDFLNEEGFSNRAGALPEFEPSTKQMKEALKLVANKGVQWKESQMKVKTLVPSDLKAESVVW
LHFLKNRLMPTTNDSTISVDRVMLLYCVMKGLYIKEWSLAARDSSYEFHSLDKLVADYGLVPDLLEKILENLSLVLYHFIDMYGQEDDRVFELIRPFRNFNSMCQVRIEA
TRALLDREYHGNGIDATLLFEILACGSKRAGKLFFGSLITQLCQRVKIVPGKDEEHHFFKPTIDLSLIGKLQQNSIQGKDKASTSQATPPSGLNIASPSQHTPFTGPSPS
SEALASAYCQLDQIRDNLKTYWAYARLINFFHLLSTSFRA