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Spg024546 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024546
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like
Genome locationscaffold12:17435822..17438980
RNA-Seq ExpressionSpg024546
SyntenySpg024546
Gene Ontology termsGO:0009299 - mRNA transcription (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607334.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3273.98Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KR   AANVSVPP T+V+L GS+SS TA  D QP+TT
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT

Query:  AGGGDQSGGASPPPWTTAASTTV
        A  GDQ+G A  PP TTAASTTV
Subjt:  AGGGDQSGGASPPPWTTAASTTV

XP_022949557.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata]8.6e-3273.17Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KR   AANVSVPP T+V+L GS+SS T   D QP+TT
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT

Query:  AGGGDQSGGASPPPWTTAASTTV
        A  GDQ+G A  PP TTAASTTV
Subjt:  AGGGDQSGGASPPPWTTAASTTV

XP_022998564.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima]2.9e-3273.17Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KR +T  NVSVPP T+V+L GS+SS T  GD QP+TT
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT

Query:  AGGGDQSGGASPPPWTTAASTTV
        A  GDQ+G A  PP TTAASTTV
Subjt:  AGGGDQSGGASPPPWTTAASTTV

XP_023523174.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita pepo subsp. pepo]8.6e-3273.17Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KR   AANVSVPP T+V+L GS+SS T   D QP+TT
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT

Query:  AGGGDQSGGASPPPWTTAASTTV
        A  GDQ+G A  PP TTAASTTV
Subjt:  AGGGDQSGGASPPPWTTAASTTV

XP_038893975.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Benincasa hispida]2.8e-3065.57Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KRP+ +A+ + PP  +V   +++S  AAGD Q +TT+
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA

Query:  GGGDQSGGASPPPWTTAASTTV
        GGG      +PPP TTAASTTV
Subjt:  GGGDQSGGASPPPWTTAASTTV

TrEMBL top hitse value%identityAlignment
A0A1S3C5Y5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like2.3e-3066.39Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KRP+  A    PP T     ST++ T  GD+QP+TTA
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA

Query:  GGGDQSGGASPPPWTTAASTTV
        GGG      +PPP TTAAST+V
Subjt:  GGGDQSGGASPPPWTTAASTTV

A0A5A7UVV8 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like2.3e-3066.39Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KRP+  A    PP T     ST++ T  GD+QP+TTA
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA

Query:  GGGDQSGGASPPPWTTAASTTV
        GGG      +PPP TTAAST+V
Subjt:  GGGDQSGGASPPPWTTAASTTV

A0A6J1GCE7 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like4.2e-3273.17Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KR   AANVSVPP T+V+L GS+SS T   D QP+TT
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT

Query:  AGGGDQSGGASPPPWTTAASTTV
        A  GDQ+G A  PP TTAASTTV
Subjt:  AGGGDQSGGASPPPWTTAASTTV

A0A6J1HK49 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like2.9e-2561.6Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALG---STSSVTAAGDDQPK
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRI+L EV+EAQAKARGIPYEKKK+KR + +A+ S P  T   L     T  V A  D QP+
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALG---STSSVTAAGDDQPK

Query:  TTAGGGDQSGGASPPPWTTAASTTV
        T+    D SG  +PPP TTAAST V
Subjt:  TTAGGGDQSGGASPPPWTTAASTTV

A0A6J1KEN4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like1.4e-3273.17Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT
        P    +AWGSLDALIGRL+AAYEEN  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKKK+KR +T  NVSVPP T+V+L GS+SS T  GD QP+TT
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVAL-GSTSSVTAAGDDQPKTT

Query:  AGGGDQSGGASPPPWTTAASTTV
        A  GDQ+G A  PP TTAASTTV
Subjt:  AGGGDQSGGASPPPWTTAASTTV

SwissProt top hitse value%identityAlignment
A2XED8 Protein G1-like72.2e-2256.41Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA
        P    +AWGSLDALIGRL+AAYEE+   P+SNPFAARAVRIYL EV+++QAKARGIPYEKKK+KR   A    V P+     GS+S+  AA        A
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA

Query:  GGGDQSGGASPPPWTTA
        GGGD   G      TTA
Subjt:  GGGDQSGGASPPPWTTA

A2Y3I2 Protein G1-like94.1e-2154.33Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAAN-----VSVPPATEVALGSTSSVTAAG--DDQPKT
        +AWGSLDALIGRL+AAYEE+  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKK+++  + AA      V+ PP       +T +   AG  DD  + 
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAAN-----VSVPPATEVALGSTSSVTAAG--DDQPKT

Query:  TAGG--GDQSGGASP--PPWTTAASTT
        T  G   D +  ASP  PP T+  +TT
Subjt:  TAGG--GDQSGGASP--PPWTTAASTT

Q5W659 Protein G1-like94.1e-2154.33Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAAN-----VSVPPATEVALGSTSSVTAAG--DDQPKT
        +AWGSLDALIGRL+AAYEE+  RP+SNPFAARAVRIYL EV+EAQAKARGIPYEKK+++  + AA      V+ PP       +T +   AG  DD  + 
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAAN-----VSVPPATEVALGSTSSVTAAG--DDQPKT

Query:  TAGG--GDQSGGASP--PPWTTAASTT
        T  G   D +  ASP  PP T+  +TT
Subjt:  TAGG--GDQSGGASP--PPWTTAASTT

Q941W1 Protein G1-like72.2e-2256.41Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA
        P    +AWGSLDALIGRL+AAYEE+   P+SNPFAARAVRIYL EV+++QAKARGIPYEKKK+KR   A    V P+     GS+S+  AA        A
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTA

Query:  GGGDQSGGASPPPWTTA
        GGGD   G      TTA
Subjt:  GGGDQSGGASPPPWTTA

Q9LMK2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 63.4e-2376.71Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPAT
        +AWGSLDALIGRL+AAYEEN  RP SNPFAARAVRIYL EV+E+QAKARGIPYEKKK+KRP T   V V  A+
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPAT

Arabidopsis top hitse value%identityAlignment
AT1G07090.1 Protein of unknown function (DUF640)2.4e-2476.71Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPAT
        +AWGSLDALIGRL+AAYEEN  RP SNPFAARAVRIYL EV+E+QAKARGIPYEKKK+KRP T   V V  A+
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPAT

AT2G31160.1 Protein of unknown function (DUF640)3.6e-2061.64Show/hide
Query:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVS
        P    +AWGSLDALIGRL+AA+EEN  +P++NPF ARAVR+YL EV++ Q+KARG+ YEKKK+KRP  +++ S
Subjt:  PVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVS

AT2G42610.1 Protein of unknown function (DUF640)2.8e-2070.97Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPS
        +AWGSLDALIGRL+AAYEEN   P++NPFA+ A+R+YL EV+E QAKARGIPY+KKK+K+P+
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPS

AT2G42610.2 Protein of unknown function (DUF640)2.8e-2070.97Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPS
        +AWGSLDALIGRL+AAYEEN   P++NPFA+ A+R+YL EV+E QAKARGIPY+KKK+K+P+
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPS

AT3G23290.2 Protein of unknown function (DUF640)6.1e-2066.67Show/hide
Query:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPA
        +AWGSLDALIGRL+AA+EEN   P++NPF ARAVR+YL EV+++QAKARGI YEKKK+KRP       +PPA
Subjt:  KAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQEAQAKARGIPYEKKKQKRPSTAANVSVPPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATTAAGGCAGTAAAAAATTGTAATGCTCGTAGTTGGATGTCTTTCATCACAAATGTGGGCAAGCCAAAGCGAAGCGTGTTGTCCTCTCCTGGCCTGAGAGTACT
TGAAGAACCACAAGCCGCCACTGTCGTTAGCGCGTTGCAGTGGCGCTCACGTGATCGAATTCTTGAAGTACTTGGACCAGTTGGGAAGACTAAGGCCTGGGGCAGCCTCG
ACGCCTTGATCGGACGCCTCAAAGCTGCCTATGAGGAGAACGACAACCGCCCGAAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCTGTGAGGTCCAAGAA
GCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAGAAGAAGCAGAAAAGACCTTCCACCGCCGCCAATGTGTCGGTGCCTCCAGCCACTGAAGTTGCCTTGGGGAGTAC
TAGCTCCGTCACTGCCGCTGGGGATGATCAGCCGAAAACCACCGCTGGCGGTGGTGATCAAAGTGGTGGCGCTTCGCCTCCTCCGTGGACGACCGCCGCTTCCACCACCG
TATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCATTAAGGCAGTAAAAAATTGTAATGCTCGTAGTTGGATGTCTTTCATCACAAATGTGGGCAAGCCAAAGCGAAGCGTGTTGTCCTCTCCTGGCCTGAGAGTACT
TGAAGAACCACAAGCCGCCACTGTCGTTAGCGCGTTGCAGTGGCGCTCACGTGATCGAATTCTTGAAGTACTTGGACCAGTTGGGAAGACTAAGGCCTGGGGCAGCCTCG
ACGCCTTGATCGGACGCCTCAAAGCTGCCTATGAGGAGAACGACAACCGCCCGAAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCTGTGAGGTCCAAGAA
GCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAGAAGAAGCAGAAAAGACCTTCCACCGCCGCCAATGTGTCGGTGCCTCCAGCCACTGAAGTTGCCTTGGGGAGTAC
TAGCTCCGTCACTGCCGCTGGGGATGATCAGCCGAAAACCACCGCTGGCGGTGGTGATCAAAGTGGTGGCGCTTCGCCTCCTCCGTGGACGACCGCCGCTTCCACCACCG
TATAG
Protein sequenceShow/hide protein sequence
MSIKAVKNCNARSWMSFITNVGKPKRSVLSSPGLRVLEEPQAATVVSALQWRSRDRILEVLGPVGKTKAWGSLDALIGRLKAAYEENDNRPKSNPFAARAVRIYLCEVQE
AQAKARGIPYEKKKQKRPSTAANVSVPPATEVALGSTSSVTAAGDDQPKTTAGGGDQSGGASPPPWTTAASTTV