; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024558 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024558
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Genome locationscaffold12:17291747..17300005
RNA-Seq ExpressionSpg024558
SyntenySpg024558
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006979 - response to oxidative stress (biological process)
GO:0042744 - hydrogen peroxide catabolic process (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR019734 - Tetratricopeptide repeat
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025089.1 putative protein ycf37 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-1133.52Show/hide
Query:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------
        F     CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                        
Subjt:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------

Query:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                                  VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

XP_022158242.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic [Momordica charantia]4.1e-1336.47Show/hide
Query:  CQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------------
        CQ EKGL VFVSAFS G+FLW+ISAEAAFAREDI+TNA                                                              
Subjt:  CQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------------

Query:  ------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                            VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

XP_022932555.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X4 [Cucurbita moschata]1.7e-1133.52Show/hide
Query:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------
        F     CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                        
Subjt:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------

Query:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                                  VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

XP_022976933.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X3 [Cucurbita maxima]1.0e-1133.52Show/hide
Query:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------
        F+    CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                        
Subjt:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------

Query:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                                  VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

XP_038898984.1 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X1 [Benincasa hispida]2.3e-1135.09Show/hide
Query:  NCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA-------------------------------------------------------------
        N Q EKGLA+FVSAFS G+ LW+ISAEAAFARED+KTNA                                                             
Subjt:  NCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA-------------------------------------------------------------

Query:  -------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                             VYNALGVSYV +DKLD+GI QFETAVKL PGYVT
Subjt:  -------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

TrEMBL top hitse value%identityAlignment
A0A6J1DWQ6 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic2.0e-1336.47Show/hide
Query:  CQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------------
        CQ EKGL VFVSAFS G+FLW+ISAEAAFAREDI+TNA                                                              
Subjt:  CQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------------

Query:  ------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                            VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

A0A6J1F2H8 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X48.4e-1233.52Show/hide
Query:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------
        F     CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                        
Subjt:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------

Query:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                                  VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

A0A6J1IH24 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X21.4e-1133.92Show/hide
Query:  NCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA-------------------------------------------------------------
        +CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                             
Subjt:  NCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA-------------------------------------------------------------

Query:  -------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                             VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  -------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

A0A6J1II93 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X11.4e-1133.92Show/hide
Query:  NCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA-------------------------------------------------------------
        +CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                             
Subjt:  NCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA-------------------------------------------------------------

Query:  -------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                             VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  -------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

A0A6J1INK4 tetratricopeptide repeat domain-containing protein PYG7, chloroplastic isoform X34.9e-1233.52Show/hide
Query:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------
        F+    CQ EKGL +FVSAFS G+ LW+ISAE+ FARE+IKTNA                                                        
Subjt:  FLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA--------------------------------------------------------

Query:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT
                                                  VYNALGVSYV +DKLD+GITQFETAVKL PGYVT
Subjt:  ------------------------------------------VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVT

SwissProt top hitse value%identityAlignment
A2YDY2 60S ribosomal protein L111.4e-1176.74Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFS+T CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

P42794 60S ribosomal protein L11-24.7e-1279.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

P42795 60S ribosomal protein L11-14.7e-1279.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

P46287 60S ribosomal protein L114.7e-1280.95Show/hide
Query:  KTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

Q0DK10 60S ribosomal protein L111.4e-1176.74Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFS+T CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

Arabidopsis top hitse value%identityAlignment
AT2G42740.1 ribosomal protein large subunit 16A3.4e-1379.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

AT3G58700.1 Ribosomal L5P family protein3.4e-1379.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

AT4G18730.1 ribosomal protein L16B3.4e-1379.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

AT5G45775.1 Ribosomal L5P family protein3.4e-1379.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF

AT5G45775.2 Ribosomal L5P family protein3.4e-1379.07Show/hide
Query:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF
        +K MQLLESGLKVKEYEL  RNFSDT CF FGIQ+HIDLGI +
Subjt:  KKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCATTTTTTGGTTTCTATGGAAGATTTCATTGTCCTCAAACCAGAGCATATCCAGGATGAAAAAGTAAAGAAGACGATGCAACTTTTGGAAAGTGGGTTGAAGGT
TAAGGAGTACGAGTTGTTTTGCAGGAACTTCAGTGACACTAGATGCTTTGAATTTGGTATTCAGAAGCACATTGATCTTGGAATCAACTTCTTGCTGTGTGCAAATTGTC
AATTAGAAAAAGGATTAGCAGTATTTGTATCAGCGTTCTCATTGGGGAAATTTTTATGGATGATATCTGCTGAAGCAGCATTTGCTAGGGAAGACATCAAAACAAATGCA
GTTTACAATGCGCTCGGAGTTAGTTATGTGCATGAGGATAAGCTTGACGAGGGAATTACCCAGTTCGAAACTGCCGTGAAGCTGCACCCTGGGTATGTTACAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCATTTTTTGGTTTCTATGGAAGATTTCATTGTCCTCAAACCAGAGCATATCCAGGATGAAAAAGTAAAGAAGACGATGCAACTTTTGGAAAGTGGGTTGAAGGT
TAAGGAGTACGAGTTGTTTTGCAGGAACTTCAGTGACACTAGATGCTTTGAATTTGGTATTCAGAAGCACATTGATCTTGGAATCAACTTCTTGCTGTGTGCAAATTGTC
AATTAGAAAAAGGATTAGCAGTATTTGTATCAGCGTTCTCATTGGGGAAATTTTTATGGATGATATCTGCTGAAGCAGCATTTGCTAGGGAAGACATCAAAACAAATGCA
GTTTACAATGCGCTCGGAGTTAGTTATGTGCATGAGGATAAGCTTGACGAGGGAATTACCCAGTTCGAAACTGCCGTGAAGCTGCACCCTGGGTATGTTACAACTTAG
Protein sequenceShow/hide protein sequence
MIHFLVSMEDFIVLKPEHIQDEKVKKTMQLLESGLKVKEYELFCRNFSDTRCFEFGIQKHIDLGINFLLCANCQLEKGLAVFVSAFSLGKFLWMISAEAAFAREDIKTNA
VYNALGVSYVHEDKLDEGITQFETAVKLHPGYVTT