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Spg024562 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024562
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold12:18414414..18429855
RNA-Seq ExpressionSpg024562
SyntenySpg024562
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]9.1e-0773.68Show/hide
Query:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFR
        GESGQ  DS+ L F GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFR

KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.2e-0477.78Show/hide
Query:  LPFWGQDRVGSWEHNRTRWNSLLPDFR
        L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  LPFWGQDRVGSWEHNRTRWNSLLPDFR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]3.0e-1050.68Show/hide
Query:  DPFVHVPELVTEGNNLSTIPKL--GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        D F        EG  L   P +   ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  DPFVHVPELVTEGNNLSTIPKL--GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]9.7e-0974.36Show/hide
Query:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        GESGQ  DS+ L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFRE

TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]7.2e-0477.78Show/hide
Query:  LPFWGQDRVGSWEHNRTRWNSLLPDFR
        L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  LPFWGQDRVGSWEHNRTRWNSLLPDFR

TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein3.5e-0477.78Show/hide
Query:  LPFWGQDRVGSWEHNRTRWNSLLPDFR
        L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  LPFWGQDRVGSWEHNRTRWNSLLPDFR

A0A5A7SPG1 Pol protein4.4e-0773.68Show/hide
Query:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFR
        GESGQ  DS+ L F GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFR

A0A5A7U2P4 Integrase catalytic domain-containing protein1.5e-1050.68Show/hide
Query:  DPFVHVPELVTEGNNLSTIPKL--GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        D F        EG  L   P +   ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  DPFVHVPELVTEGNNLSTIPKL--GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR

A0A5D3C3J6 Gag/pol protein4.7e-0974.36Show/hide
Query:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        GESGQ  DS+ L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  GESGQYADSLSLPFWGQDRVGSWEHNRTRWNSLLPDFRE

A0A5D3E3M6 Uncharacterized protein3.5e-0477.78Show/hide
Query:  LPFWGQDRVGSWEHNRTRWNSLLPDFR
        L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  LPFWGQDRVGSWEHNRTRWNSLLPDFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAATTCTTCAATTCCGTGGATGATTTCTTTGCACGAATCGGTTGTAGACGACCACGAGAGTCTTCCCCGCTATTCTCCGGCCTTAGAACGAGTTGTGGGACTCA
AGAACGTGATGAATTTCTAGAGAGAAGCTCGTCTCTAGCTGAGTCCCTAATGAACAATCGGTTTGTGGTCCCACCACTAAACCTAAAACCTCTCGGGCCAATGAGAGGGC
AGGATCCCTTTGTTCACGTTCCAGAGTTAGTCACTGAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTGAGAGTGGCCAATACGCCGACTCATTAAGCCTACCATTT
TGGGGACAAGACCGAGTGGGGAGTTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACAGACACTCGTGAAGG
ACTAAGTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAATTCTTCAATTCCGTGGATGATTTCTTTGCACGAATCGGTTGTAGACGACCACGAGAGTCTTCCCCGCTATTCTCCGGCCTTAGAACGAGTTGTGGGACTCA
AGAACGTGATGAATTTCTAGAGAGAAGCTCGTCTCTAGCTGAGTCCCTAATGAACAATCGGTTTGTGGTCCCACCACTAAACCTAAAACCTCTCGGGCCAATGAGAGGGC
AGGATCCCTTTGTTCACGTTCCAGAGTTAGTCACTGAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTGAGAGTGGCCAATACGCCGACTCATTAAGCCTACCATTT
TGGGGACAAGACCGAGTGGGGAGTTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACAGACACTCGTGAAGG
ACTAAGTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCTCACTGA
Protein sequenceShow/hide protein sequence
MDEFFNSVDDFFARIGCRRPRESSPLFSGLRTSCGTQERDEFLERSSSLAESLMNNRFVVPPLNLKPLGPMRGQDPFVHVPELVTEGNNLSTIPKLGESGQYADSLSLPF
WGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTREGLSSRYWSISVDTENMSAVRRVQLSIRSH