CuGenDBv2

Gene ID	Spg024565
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	folate-biopterin transporter 1, chloroplastic
Genome location	scaffold12:15896065..15905982
RNA-Seq Expression	Spg024565
Synteny	Spg024565
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039309 - Biopterin transporter family

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040805.1 folate-biopterin transporter 1 [Cucumis melo var. makuwa]

1.6e-17

92.86

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMATLVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

XP_008447156.1 PREDICTED: folate-biopterin transporter 1, chloroplastic [Cucumis melo]

1.6e-17

92.86

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMATLVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

XP_023548042.1 folate-biopterin transporter 1, chloroplastic-like [Cucurbita pepo subsp. pepo]

7.7e-17

91.07

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMA LVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

XP_038906678.1 folate-biopterin transporter 1, chloroplastic isoform X1 [Benincasa hispida]

1.6e-17

92.86

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMATLVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

XP_038906679.1 folate-biopterin transporter 1, chloroplastic isoform X2 [Benincasa hispida]

1.6e-17

92.86

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMATLVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BHD4 folate-biopterin transporter 1, chloroplastic

7.5e-18

92.86

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMATLVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

A0A5A7TH78 Folate-biopterin transporter 1

7.5e-18

92.86

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMATLVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

A0A6J1C8S1 folate-biopterin transporter 1, chloroplastic-like isoform X1

9.2e-16

85.71

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGA SW+ MATLV+SKYGAA+CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

A0A6J1H635 folate-biopterin transporter 1, chloroplastic-like

3.7e-17

91.07

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMA LVNSKYGAA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

A0A6J1KXJ7 folate-biopterin transporter 1, chloroplastic-like

1.9e-16

89.29

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYLILS LLGAFSWSFMA LVNSKY AA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

SwissProt top hits

e value

%identity

Alignment

Q55721 Folate-biopterin transporter

3.4e-07

50.75

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Query:  WVLFVATILHRLSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        W+L    +L  +SD VPLFGYRRRSYL LS L+G+  W   A  V+S   A   +L  SLSVA  DV
Subjt:  WVLFVATILHRLSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

Q9SKZ5 Folate-biopterin transporter 1, chloroplastic

6.1e-17

82.14

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYL+LS LLGAFSWS MA  V+SKY AA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

Arabidopsis top hits

e value

%identity

Alignment

AT2G32040.1 Major facilitator superfamily protein

4.4e-18

82.14

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Query:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV
        +SD VPLFGYRRRSYL+LS LLGAFSWS MA  V+SKY AA CILLGSLSVAFSDV
Subjt:  LSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDV

Sequences

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CDS sequence

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ATGAGCAATCCGCCTGGGGTAAGATTCGAGCTTGATCCAGAAATTGAAAGGACATTCAGGAGAAGAAGCAGAGAGCAGCGAAGAAATCAAAATCCAATGGATAACGTGTC
GTGTCTCCCTGAAGTTCCAGAAGATCCAATTAATCCCCACCAGAATCGTGTGCTGCAGCCTAATCCACCGCTTGAGCAAAATGAACAGCAAAATAATCCGGCTGAGAACC
CGATTGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGTACCCA
GCCTTATCCCTATACTATAGACCTTTTAGGTTGTTACTTGGACACCGATCCCCGTATGTCCCCACTGAAGGATTGGAATTCCATAATTTCGTAAAGCGGAAGCGTGATTG
GGACCGATTCCCCCCATTCGGTCTTGCCCCTGAAATGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCG
TATCACATAGTGTCACCAGGATAAGCTCCGCCTTTGTGGGTAGCACCTCCGCCGTTCATGTGTTCGTTGTCGTCCTAATATACCGCAACTCGACAAGTGTGAGTTTGTCG
CGCAGTTCCCCGCAGCTCGACCACCGTTTATGGGTTTTGTTCGTGGCCACTATTCTCCACCGTCTAAGTGACTTTGTTCCTCTTTTTGGTTACCGAAGAAGGTCCTACTT
AATTTTATCAAGGCTCCTTGGTGCGTTCTCATGGAGCTTTATGGCTACCCTTGTTAATAGCAAGTATGGTGCTGCTACGTGTATACTTCTCGGGTCTCTTTCTGTGGCGT
TTTCTGATGTTAACCTCGTGAGAATGATGGCTCCATTTCAACTAGTAGATTCTTGA

mRNA sequence

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Protein sequence

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MSNPPGVRFELDPEIERTFRRRSREQRRNQNPMDNVSCLPEVPEDPINPHQNRVLQPNPPLEQNEQQNNPAENPIDTPTRMSPTWMLWIIASVSNTRWAVSHSVTRIRYP
ALSLYYRPFRLLLGHRSPYVPTEGLEFHNFVKRKRDWDRFPPFGLAPEMDTPTRMSPTWMLWIIASVSNTRWAVSHSVTRISSAFVGSTSAVHVFVVVLIYRNSTSVSLS
RSSPQLDHRLWVLFVATILHRLSDFVPLFGYRRRSYLILSRLLGAFSWSFMATLVNSKYGAATCILLGSLSVAFSDVNLVRMMAPFQLVDS

Spg024565 (gene) of Sponge gourd (cylindrica) v1 genome