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Spg024570 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024570
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:15603803..15606021
RNA-Seq ExpressionSpg024570
SyntenySpg024570
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]4.7e-1380.39Show/hide
Query:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        PRG+R SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESVH+
Subjt:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.5e-1482.35Show/hide
Query:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        PRG+R +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESVH+
Subjt:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.1e-1378.43Show/hide
Query:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        PRG+R SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Subjt:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]2.7e-1381.13Show/hide
Query:  LWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        +WPRG+R SLQT ELDKT  IELPVPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  LWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]7.7e-1661.25Show/hide
Query:  RRDAGSSSRDHGGVLEKAQDFRAKQEDLWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        R  A   S    G++ K   +     ++WPRG+R S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  RRDAGSSSRDHGGVLEKAQDFRAKQEDLWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein2.3e-1380.39Show/hide
Query:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        PRG+R SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESVH+
Subjt:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1482.35Show/hide
Query:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        PRG+R +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESVH+
Subjt:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7V2F2 Uncharacterized protein1.0e-1378.43Show/hide
Query:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        PRG+R SLQ G+L+KTVEIELP+PDTLPTS+ESS+S+SSTWLELY ESVH+
Subjt:  PRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5D3BET3 Uncharacterized protein3.7e-1661.25Show/hide
Query:  RRDAGSSSRDHGGVLEKAQDFRAKQEDLWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        R  A   S    G++ K   +     ++WPRG+R S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  RRDAGSSSRDHGGVLEKAQDFRAKQEDLWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5D3DWP3 Uncharacterized protein1.3e-1381.13Show/hide
Query:  LWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        +WPRG+R SLQT ELDKT  IELPVPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  LWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTGGAAATCGAAGAAAACTGGAAAACCTGAGGCATGGCGTCGAGACGCTACTCACGGTGTCTCGACGTCGTCGAACATACGTGAAAAATGAAATTATCGGGCCAGCGTG
GAGACACAGCCTTCAGCGTCGAGACGCTGGCAGCAGTTCGCGTGATCATGGTGGCGTATTGGAGAAAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAG
GAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCGGCTGAAAGTTCTAGATCAAGCTCCAGT
ACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
GCTGGAAATCGAAGAAAACTGGAAAACCTGAGGCATGGCGTCGAGACGCTACTCACGGTGTCTCGACGTCGTCGAACATACGTGAAAAATGAAATTATCGGGCCAGCGTG
GAGACACAGCCTTCAGCGTCGAGACGCTGGCAGCAGTTCGCGTGATCATGGTGGCGTATTGGAGAAAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAG
GAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCGGCTGAAAGTTCTAGATCAAGCTCCAGT
ACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
AGNRRKLENLRHGVETLLTVSRRRRTYVKNEIIGPAWRHSLQRRDAGSSSRDHGGVLEKAQDFRAKQEDLWPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSS
TWLELYIESVHIVNVL