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Spg024572 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024572
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:20468447..20471147
RNA-Seq ExpressionSpg024572
SyntenySpg024572
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.1e-0875.56Show/hide
Query:  RPRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        RPRGNR SL T +LDK+VEIELP+PDTLPT AES  S+SSTW+EL
Subjt:  RPRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.1e-1081.82Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR +LHT +LDK+VEIELPVPDTLPTSAESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]5.6e-0872.73Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR SL   +L+K+VEIELP+PDTLPTS+ESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.9e-0881.82Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR SL TRELDK+  IELPVPDTLPTSAESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]3.9e-0979.55Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR S  T +LDK+VEIELPVPDTLPTSAESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein5.5e-0975.56Show/hide
Query:  RPRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        RPRGNR SL T +LDK+VEIELP+PDTLPT AES  S+SSTW+EL
Subjt:  RPRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

A0A5A7UAH6 CCHC-type domain-containing protein1.0e-1081.82Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR +LHT +LDK+VEIELPVPDTLPTSAESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

A0A5A7V2F2 Uncharacterized protein2.7e-0872.73Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR SL   +L+K+VEIELP+PDTLPTS+ESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

A0A5D3BET3 Uncharacterized protein1.9e-0979.55Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR S  T +LDK+VEIELPVPDTLPTSAESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

A0A5D3DWP3 Uncharacterized protein9.4e-0981.82Show/hide
Query:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL
        PRGNR SL TRELDK+  IELPVPDTLPTSAESS S+SSTW+EL
Subjt:  PRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCTATTCTGGGAAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACATAC
CAGGGAACTAGATAAGTCAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGTTCAAGCTCTAGTACGTGGGTGGAGTTGTTGTTGG
GTCCTAGACGGATTCCTCCCGGAACTCCGAATCTTTTGGAATGTGTTTCAATCCCAATGAAGTGCGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACT
GGCGTTCACCAATACACAATGATCGTAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCTATTCTGGGAAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACATAC
CAGGGAACTAGATAAGTCAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGTTCAAGCTCTAGTACGTGGGTGGAGTTGTTGTTGG
GTCCTAGACGGATTCCTCCCGGAACTCCGAATCTTTTGGAATGTGTTTCAATCCCAATGAAGTGCGACCGATCAAGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACT
GGCGTTCACCAATACACAATGATCGTAGTGTGA
Protein sequenceShow/hide protein sequence
MEPRICVVCVRGYSGKIGWESHFHFFRPRGNRSSLHTRELDKSVEIELPVPDTLPTSAESSSSSSSTWVELLLGPRRIPPGTPNLLECVSIPMKCDRSSTRQLAIPSSVT
GVHQYTMIVV