; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024576 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024576
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold12:15965926..15967464
RNA-Seq ExpressionSpg024576
SyntenySpg024576
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH80834.1 hypothetical protein [Trifolium medium]1.1e-1231.62Show/hide
Query:  EGNALLTSQDDDFLSAVLAAVARPGAQWEGRGSAR--TLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTA
        E   L+ +  D+ L+AV+  +  PG +W  + +     +K   L  EV  W  L+K+ I+PTTH+ T++  R+VL++CIM  I +++GRII + +   + 
Subjt:  EGNALLTSQDDDFLSAVLAAVARPGAQWEGRGSAR--TLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTA

Query:  KSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAF
        + +G ++ P L+T LC+   +     +E  P  Q F
Subjt:  KSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAF

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]1.4e-1037.84Show/hide
Query:  LTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAM
        +T QD   L  VL  VA  GA+W      A T     L      W H +K+R++PTTH  T+S  R++L++ ++ G ++++GR+I   +R   A+  GA+
Subjt:  LTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAM

Query:  FCPGLVTRLCR
        F P L+TRLCR
Subjt:  FCPGLVTRLCR

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]1.8e-1034.45Show/hide
Query:  PDAEGNALLTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQT
        P  E +  + +  +  L  VL  VA  GA+W      A T     L      W H +K+R++PTTH   +S  R++L++ ++NG ++++GR+I   +R  
Subjt:  PDAEGNALLTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQT

Query:  TAKSKGAMFCPGLVTRLCR
         A+  GA+F P L+TRLCR
Subjt:  TAKSKGAMFCPGLVTRLCR

XP_024971944.1 uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]5.3e-1025.84Show/hide
Query:  LLPDMPDAEGNALLTSQDDDF--LSAVLAAVARPGAQWEGRGS--ARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRI
        LL   P AE +    SQ   F  L  +   + + G +W+   +   RT +A  L      W++ I+  + PTTHD+++S+ +++L+YC++ G T+++G++
Subjt:  LLPDMPDAEGNALLTSQDDDF--LSAVLAAVARPGAQWEGRGS--ARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRI

Query:  ISEALRQTTAKSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAFDDEWWTHITRTHNMRLQAETLRQDPASQATRA
        + +A+   + + +G +F P L+ +L    G+    D+ V    +  +++W   +     +R ++E  R+ P    TRA
Subjt:  ISEALRQTTAKSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAFDDEWWTHITRTHNMRLQAETLRQDPASQATRA

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]1.6e-1129.66Show/hide
Query:  DDFLSAVLAAVARPGAQWEGRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAMFCPGLV
        D+ L  +LA VA  G  W  +G AR LK Q L  E   W + +++ I P +HD  L + RV+++YCI+     D+GR+I   ++    ++ G +  P L+
Subjt:  DDFLSAVLAAVARPGAQWEGRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAMFCPGLV

Query:  TRLCRIFGLLLAPDEEVRPMRQAFDDEWWTHITRTH-NMRLQAET
         RL +   +L  P + +   + + D +    + R + N++  A T
Subjt:  TRLCRIFGLLLAPDEEVRPMRQAFDDEWWTHITRTH-NMRLQAET

TrEMBL top hitse value%identityAlignment
A0A2P5BCG4 Uncharacterized protein (Fragment)6.7e-1137.84Show/hide
Query:  LTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAM
        +T QD   L  VL  VA  GA+W      A T     L      W H +K+R++PTTH  T+S  R++L++ ++ G ++++GR+I   +R   A+  GA+
Subjt:  LTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAM

Query:  FCPGLVTRLCR
        F P L+TRLCR
Subjt:  FCPGLVTRLCR

A0A2P5CPE8 Uncharacterized protein3.3e-1037.25Show/hide
Query:  LSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAMFCPGLVTR
        L+ VL  VA  GA+W      A T     L+     W H +K+R++PTTH  T+S  RV+L+Y ++ G ++++G+II   +    A+  GA+F P L+TR
Subjt:  LSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTAKSKGAMFCPGLVTR

Query:  LC
        +C
Subjt:  LC

A0A2P5DXM3 Uncharacterized protein8.7e-1134.45Show/hide
Query:  PDAEGNALLTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQT
        P  E +  + +  +  L  VL  VA  GA+W      A T     L      W H +K+R++PTTH   +S  R++L++ ++NG ++++GR+I   +R  
Subjt:  PDAEGNALLTSQDDDFLSAVLAAVARPGAQWE-GRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQT

Query:  TAKSKGAMFCPGLVTRLCR
         A+  GA+F P L+TRLCR
Subjt:  TAKSKGAMFCPGLVTRLCR

A0A392M2J7 Uncharacterized protein (Fragment)5.5e-1331.62Show/hide
Query:  EGNALLTSQDDDFLSAVLAAVARPGAQWEGRGSAR--TLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTA
        E   L+ +  D+ L+AV+  +  PG +W  + +     +K   L  EV  W  L+K+ I+PTTH+ T++  R+VL++CIM  I +++GRII + +   + 
Subjt:  EGNALLTSQDDDFLSAVLAAVARPGAQWEGRGSAR--TLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMNGITLDLGRIISEALRQTTA

Query:  KSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAF
        + +G ++ P L+T LC+   +     +E  P  Q F
Subjt:  KSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAF

W9S7D3 Uncharacterized protein4.3e-1029.68Show/hide
Query:  WKLVCENFPDYAPAL----LPDMPDAEG--NALLTSQDDDFLSAVLAAVARPGAQW--EGRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPR
        W   C N P     L    L D+PD E   N+   S ++D L  V+  +   G +W    RGS  T   + L      W H ++ R+MP++H   +   R
Subjt:  WKLVCENFPDYAPAL----LPDMPDAEG--NALLTSQDDDFLSAVLAAVARPGAQW--EGRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPR

Query:  VVLVYCIMNGITLDLGRIISEALRQTTAKSKGAMFCPGLVTRLCRIFGLLLAPDE
         +L+YC+M G  L++GR+I + +     +  G ++ P L+T+LC   G+ +   E
Subjt:  VVLVYCIMNGITLDLGRIISEALRQTTAKSKGAMFCPGLVTRLCRIFGLLLAPDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGACCAAATCTCCCGCTGCAAATGGAAGTTAGTCTGCGAGAACTTTCCTGATTACGCCCCTGCGCTGTTGCCAGACATGCCGGATGCGGAGGGCAATGCATTGTT
GACCTCCCAGGACGACGACTTCCTGAGTGCAGTGCTAGCTGCGGTGGCCAGGCCAGGCGCCCAATGGGAAGGGCGTGGCTCTGCGAGGACCCTAAAAGCGCAGCTGTTGG
ATTTTGAGGTCACAACTTGGATGCATTTAATAAAGAATCGCATCATGCCCACAACGCATGATGCCACGTTAAGTATCCCAAGGGTGGTCCTGGTATACTGCATAATGAAT
GGGATCACCCTTGACTTGGGTAGAATCATTTCAGAAGCCCTACGCCAAACTACTGCAAAATCAAAGGGCGCGATGTTCTGCCCTGGCCTTGTCACACGCCTCTGCCGCAT
ATTTGGCCTGCTACTAGCACCAGACGAAGAAGTTCGACCCATGCGACAGGCCTTTGATGATGAATGGTGGACACACATAACGCGCACCCACAACATGCGTCTGCAGGCAG
AGACTCTACGCCAAGACCCTGCATCCCAGGCCACAAGAGCTGCCCCTGCGCCTGAAGCACCAAAGAAGGAAAGACGCAAACAAACTGCGGAATCCTTGTTGGCACCACTG
CCACCACCGTCGCTGCCTGTCCTCCAGCCAACACCTTCTATCCAGCACGTTGACACCGTGCATCAAATTGAGGTTCGCGAGACCCTGTCGCCTGACCCTCCTCGTAAACA
AGAAAGCCTTACGCCGAGCTCCCAACCGCAGTCCACACCATCTGCCAGCACAAGCAATGTTGCGCCTACTCCACACCTTGATGTGGAAATAACCCTCATCTTCTCTAAGT
TAAGGCAGATGGTCCACGAAGCCATCGAACCGCTGTGCAAGCAGCAAGAAGCGCAGCACAAGCAGCAAGAGGAATTATCCCAGCGCGTCAATGCATTAGTACTCTTCCTT
ATGCGCTGGACCCATTCCTTTGGCCGCCTGCCAATTATGCCAGATCTTTTCAATATGTTGCTGGGCGACTTAAGGAAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGCGA
AACTGCCACGTCACAGCTCGTTAGCCATTTTAACAAACCGAATTCTGTTAAGCTATTCTCGGATTTATGGAGCAAGGAGAGCCATCCACGTGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGACCAAATCTCCCGCTGCAAATGGAAGTTAGTCTGCGAGAACTTTCCTGATTACGCCCCTGCGCTGTTGCCAGACATGCCGGATGCGGAGGGCAATGCATTGTT
GACCTCCCAGGACGACGACTTCCTGAGTGCAGTGCTAGCTGCGGTGGCCAGGCCAGGCGCCCAATGGGAAGGGCGTGGCTCTGCGAGGACCCTAAAAGCGCAGCTGTTGG
ATTTTGAGGTCACAACTTGGATGCATTTAATAAAGAATCGCATCATGCCCACAACGCATGATGCCACGTTAAGTATCCCAAGGGTGGTCCTGGTATACTGCATAATGAAT
GGGATCACCCTTGACTTGGGTAGAATCATTTCAGAAGCCCTACGCCAAACTACTGCAAAATCAAAGGGCGCGATGTTCTGCCCTGGCCTTGTCACACGCCTCTGCCGCAT
ATTTGGCCTGCTACTAGCACCAGACGAAGAAGTTCGACCCATGCGACAGGCCTTTGATGATGAATGGTGGACACACATAACGCGCACCCACAACATGCGTCTGCAGGCAG
AGACTCTACGCCAAGACCCTGCATCCCAGGCCACAAGAGCTGCCCCTGCGCCTGAAGCACCAAAGAAGGAAAGACGCAAACAAACTGCGGAATCCTTGTTGGCACCACTG
CCACCACCGTCGCTGCCTGTCCTCCAGCCAACACCTTCTATCCAGCACGTTGACACCGTGCATCAAATTGAGGTTCGCGAGACCCTGTCGCCTGACCCTCCTCGTAAACA
AGAAAGCCTTACGCCGAGCTCCCAACCGCAGTCCACACCATCTGCCAGCACAAGCAATGTTGCGCCTACTCCACACCTTGATGTGGAAATAACCCTCATCTTCTCTAAGT
TAAGGCAGATGGTCCACGAAGCCATCGAACCGCTGTGCAAGCAGCAAGAAGCGCAGCACAAGCAGCAAGAGGAATTATCCCAGCGCGTCAATGCATTAGTACTCTTCCTT
ATGCGCTGGACCCATTCCTTTGGCCGCCTGCCAATTATGCCAGATCTTTTCAATATGTTGCTGGGCGACTTAAGGAAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGCGA
AACTGCCACGTCACAGCTCGTTAGCCATTTTAACAAACCGAATTCTGTTAAGCTATTCTCGGATTTATGGAGCAAGGAGAGCCATCCACGTGTCTAG
Protein sequenceShow/hide protein sequence
MTDQISRCKWKLVCENFPDYAPALLPDMPDAEGNALLTSQDDDFLSAVLAAVARPGAQWEGRGSARTLKAQLLDFEVTTWMHLIKNRIMPTTHDATLSIPRVVLVYCIMN
GITLDLGRIISEALRQTTAKSKGAMFCPGLVTRLCRIFGLLLAPDEEVRPMRQAFDDEWWTHITRTHNMRLQAETLRQDPASQATRAAPAPEAPKKERRKQTAESLLAPL
PPPSLPVLQPTPSIQHVDTVHQIEVRETLSPDPPRKQESLTPSSQPQSTPSASTSNVAPTPHLDVEITLIFSKLRQMVHEAIEPLCKQQEAQHKQQEELSQRVNALVLFL
MRWTHSFGRLPIMPDLFNMLLGDLRKQNLCWSKAGSETATSQLVSHFNKPNSVKLFSDLWSKESHPRV