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Spg024577 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024577
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:19890488..19892504
RNA-Seq ExpressionSpg024577
SyntenySpg024577
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-1546.28Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIR------------------FNVQEGQRVSLEED
        RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS ++S  ++ +   F+                   FNV  G    +  D
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIR------------------FNVQEGQRVSLEED

Query:  DVRWLHVIFRAKLAGGPGGGV
        +V WLH +F AK AGGPGGGV
Subjt:  DVRWLHVIFRAKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.2e-1740.37Show/hide
Query:  IRKAHAKPAIAESGCKTIKGSREPQICVVCV-------GGNSGQIGWESHFYFFR------PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSK
        I K +AKPAIAESGC       +P I +  +       G ++  +     F  F       PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++S 
Subjt:  IRKAHAKPAIAESGCKTIKGSREPQICVVCV-------GGNSGQIGWESHFYFFR------PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSK

Query:  CFISMISMFIRFNV---------------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGV
         ++ +    +   +                EG    +  DD+ WLH +F AK AG PGGGV
Subjt:  CFISMISMFIRFNV---------------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGV

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.7e-1652.83Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGG
        +PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  ++S  F +  M  + + FNV  G    +  DDV  LHV+FRAK AGG
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGG

Query:  PGGGVT
        PGGGVT
Subjt:  PGGGVT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.0e-1647.46Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNV---------------QEGQRVSLEEDDVRW
        PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++S  ++ +   F+   +                EG    +  DDV W
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNV---------------QEGQRVSLEEDDVRW

Query:  LHVIFRAKLAGGPGGGVT
        LH +FRAK+AGGPGGGVT
Subjt:  LHVIFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.1e-1546.72Show/hide
Query:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSKCFISM------ISMF------------IRFNVQEGQRVSLEED
        +  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++S  ++ +      + MF            + FNV  G    +  D
Subjt:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSKCFISM------ISMF------------IRFNVQEGQRVSLEED

Query:  DVRWLHVIFRAKLAGGPGGGVT
        DV WLH +FRAK  GGPGGGVT
Subjt:  DVRWLHVIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein9.4e-1646.28Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIR------------------FNVQEGQRVSLEED
        RPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS ++S  ++ +   F+                   FNV  G    +  D
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIR------------------FNVQEGQRVSLEED

Query:  DVRWLHVIFRAKLAGGPGGGV
        +V WLH +F AK AGGPGGGV
Subjt:  DVRWLHVIFRAKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein5.9e-1840.37Show/hide
Query:  IRKAHAKPAIAESGCKTIKGSREPQICVVCV-------GGNSGQIGWESHFYFFR------PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSK
        I K +AKPAIAESGC       +P I +  +       G ++  +     F  F       PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+++S 
Subjt:  IRKAHAKPAIAESGCKTIKGSREPQICVVCV-------GGNSGQIGWESHFYFFR------PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSK

Query:  CFISMISMFIRFNV---------------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGV
         ++ +    +   +                EG    +  DD+ WLH +F AK AG PGGGV
Subjt:  CFISMISMFIRFNV---------------QEGQRVSLEEDDVRWLHVIFRAKLAGGPGGGV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.2e-1652.83Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGG
        +PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES  ++S  F +  M  + + FNV  G    +  DDV  LHV+FRAK AGG
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHVIFRAKLAGG

Query:  PGGGVT
        PGGGVT
Subjt:  PGGGVT

A0A5A7VIY9 Uncharacterized protein1.5e-1647.46Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNV---------------QEGQRVSLEEDDVRW
        PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++S  ++ +   F+   +                EG    +  DDV W
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNV---------------QEGQRVSLEEDDVRW

Query:  LHVIFRAKLAGGPGGGVT
        LH +FRAK+AGGPGGGVT
Subjt:  LHVIFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein5.5e-1646.72Show/hide
Query:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSKCFISM------ISMF------------IRFNVQEGQRVSLEED
        +  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++S  ++ +      + MF            + FNV  G    +  D
Subjt:  FFRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSKCFISM------ISMF------------IRFNVQEGQRVSLEED

Query:  DVRWLHVIFRAKLAGGPGGGVT
        DV WLH +FRAK  GGPGGGVT
Subjt:  DVRWLHVIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTATAAAGGGTAGCAGAGAACCTCAAATCTGTGTTGTCTG
TGTTGGGGGCAATTCTGGGCAAATTGGTTGGGAATCGCATTTTTATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAG
GGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGCTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTATAAAGGGTAGCAGAGAACCTCAAATCTGTGTTGTCTG
TGTTGGGGGCAATTCTGGGCAAATTGGTTGGGAATCGCATTTTTATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAG
GGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGTCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGGCTTATAA
Protein sequenceShow/hide protein sequence
MVLRLKKIRKAHAKPAIAESGCKTIKGSREPQICVVCVGGNSGQIGWESHFYFFRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSKCFISMISMFIRFNVQE
GQRVSLEEDDVRWLHVIFRAKLAGGPGGGVTGL