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Spg024584 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024584
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:20923488..20925157
RNA-Seq ExpressionSpg024584
SyntenySpg024584
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]3.4e-0850Show/hide
Query:  VFGLSYTEGIKR----RIS--------GVLWCFEHSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        +FGLSY EG KR    R+S         V++      V + N  +  VEIELPVPDTLPTSAES RS+S+TW+ELY ES+++
Subjt:  VFGLSYTEGIKR----RIS--------GVLWCFEHSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1080Show/hide
Query:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        V+K NQKLY VEIELPVPDTL TSAESSRS+SSTW+ELY ESV++
Subjt:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.5e-1148.18Show/hide
Query:  KANAKPAIAESEFNLSTPGFVFGLSYTEGIKRRI------SGVLWCFE--------------HSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTW
        K NAKPAIAES  N      +FGLSY E ++         SG    F               H+G  KL++    VEIELPVPDTLPTSAESS+S+SSTW
Subjt:  KANAKPAIAESEFNLSTPGFVFGLSYTEGIKRRI------SGVLWCFE--------------HSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTW

Query:  VELYIESVYI
        +ELY ESV++
Subjt:  VELYIESVYI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.7e-0746.81Show/hide
Query:  VFGLSYTE-----GIKRRISGVLW---CFEHSGVYKLNQKLYFV----------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        +FGLSY E     G   + +GVL          V+K +QKLY V                 IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  VFGLSYTE-----GIKRRISGVLW---CFEHSGVYKLNQKLYFV----------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1080Show/hide
Query:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        V+K NQKLY VEIELPVPDTL TSAESSRS+SSTW+ELY ESV++
Subjt:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.3e-1080Show/hide
Query:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        V+K NQKLY VEIELPVPDTL TSAESSRS+SSTW+ELY ESV++
Subjt:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1148.18Show/hide
Query:  KANAKPAIAESEFNLSTPGFVFGLSYTEGIKRRI------SGVLWCFE--------------HSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTW
        K NAKPAIAES  N      +FGLSY E ++         SG    F               H+G  KL++    VEIELPVPDTLPTSAESS+S+SSTW
Subjt:  KANAKPAIAESEFNLSTPGFVFGLSYTEGIKRRI------SGVLWCFE--------------HSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTW

Query:  VELYIESVYI
        +ELY ESV++
Subjt:  VELYIESVYI

A0A5D3BTP3 Reverse transcriptase1.3e-1080Show/hide
Query:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        V+K NQKLY VEIELPVPDTL TSAESSRS+SSTW+ELY ESV++
Subjt:  VYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5D3DIM8 Uncharacterized protein1.6e-0850Show/hide
Query:  VFGLSYTEGIKR----RIS--------GVLWCFEHSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        +FGLSY EG KR    R+S         V++      V + N  +  VEIELPVPDTLPTSAES RS+S+TW+ELY ES+++
Subjt:  VFGLSYTEGIKR----RIS--------GVLWCFEHSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5D3DWP3 Uncharacterized protein8.1e-0846.81Show/hide
Query:  VFGLSYTE-----GIKRRISGVLW---CFEHSGVYKLNQKLYFV----------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        +FGLSY E     G   + +GVL          V+K +QKLY V                 IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  VFGLSYTE-----GIKRRISGVLW---CFEHSGVYKLNQKLYFV----------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGCTAATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTGTATTCGGTTTGAGCTACACAGAAGGAATTAAGAGGAGGATCTCTGGTGT
TCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCA
GATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
AAAGCTAATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTGTATTCGGTTTGAGCTACACAGAAGGAATTAAGAGGAGGATCTCTGGTGT
TCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCA
GATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
KANAKPAIAESEFNLSTPGFVFGLSYTEGIKRRISGVLWCFEHSGVYKLNQKLYFVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVL