; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024585 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024585
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:20630586..20640471
RNA-Seq ExpressionSpg024585
SyntenySpg024585
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]5.9e-1345.16Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLV--------CVVFHAECFISKISMFIRFSAQEGQQVSLE
        LS  R     VEIELP+ DTL TSAESS S+SS                Y P+ VM+   +         CVVFH E  ISKI MFIRF+   G    + 
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLV--------CVVFHAECFISKISMFIRFSAQEGQQVSLE

Query:  EDDFRWLHAIFRAKLAGGPGRGVT
         +D RW H +FRAK AGG G GVT
Subjt:  EDDFRWLHAIFRAKLAGGPGRGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1145.69Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH
        LS  R   + VEIELP+PDTLPTSAESS S+SS                YF N+VMS LHLV                  FS   G    +  DD  WLH
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH

Query:  AIFRAKLAGGPGRGVT
        A+FRAK  GGPG GVT
Subjt:  AIFRAKLAGGPGRGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1150.54Show/hide
Query:  STVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGVTI
        + VEIEL +PDTLPTSAES  S+SSYF N+VMSGLHLV                  F+   G    +  DD   LH +FRAK AGGPG GVT+
Subjt:  STVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGVTI

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.7e-1249.49Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGV
        LS  R   + VEIELP+PDTLPTS ESS S+SSYF N+VMSGLHLV                  F+        +  DD  WLHA+FRAK  GGP  GV
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.1e-1145.69Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH
        LS  R   + VEIELP+PDTLPTSAESS S+SS                YF N+VMS LHLV                  FS   G    +  DD  WLH
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH

Query:  AIFRAKLAGGPGRGVT
        A+FRAK  GGPG GVT
Subjt:  AIFRAKLAGGPGRGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UEC1 Uncharacterized protein2.9e-1345.16Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLV--------CVVFHAECFISKISMFIRFSAQEGQQVSLE
        LS  R     VEIELP+ DTL TSAESS S+SS                Y P+ VM+   +         CVVFH E  ISKI MFIRF+   G    + 
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLV--------CVVFHAECFISKISMFIRFSAQEGQQVSLE

Query:  EDDFRWLHAIFRAKLAGGPGRGVT
         +D RW H +FRAK AGG G GVT
Subjt:  EDDFRWLHAIFRAKLAGGPGRGVT

A0A5A7V9N3 Reverse transcriptase5.4e-1245.69Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH
        LS  R   + VEIELP+PDTLPTSAESS S+SS                YF N+VMS LHLV                  FS   G    +  DD  WLH
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH

Query:  AIFRAKLAGGPGRGVT
        A+FRAK  GGPG GVT
Subjt:  AIFRAKLAGGPGRGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein5.4e-1250.54Show/hide
Query:  STVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGVTI
        + VEIEL +PDTLPTSAES  S+SSYF N+VMSGLHLV                  F+   G    +  DD   LH +FRAK AGGPG GVT+
Subjt:  STVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGVTI

A0A5D3BMJ4 Retrotrans_gag domain-containing protein8.3e-1349.49Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGV
        LS  R   + VEIELP+PDTLPTS ESS S+SSYF N+VMSGLHLV                  F+        +  DD  WLHA+FRAK  GGP  GV
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGV

A0A5D3DSY7 Putative Retrotransposon protein5.4e-1245.69Show/hide
Query:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH
        LS  R   + VEIELP+PDTLPTSAESS S+SS                YF N+VMS LHLV                  FS   G    +  DD  WLH
Subjt:  LSAKRRGFSTVEIELPMPDTLPTSAESSRSSSS----------------YFPNRVMSGLHLVCVVFHAECFISKISMFIRFSAQEGQQVSLEEDDFRWLH

Query:  AIFRAKLAGGPGRGVT
        A+FRAK  GGPG GVT
Subjt:  AIFRAKLAGGPGRGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCAAGCCCTCCATAGGGGGGACTGTAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTACTGTGGTTTCGTTGTTGAATTTAAAGTACTTGAGGGAGAG
AGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGATGAAGATAGGAAAAGATCATGCAAAGCCAGCTACAGCAGAATCTTGGTAAGTTGTAGAGTGTTCG
AAAATGAAGCGTTTGATGTGTATTACATTAATTTTGGTTTAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGGCAGCGTCGAGACACTATGTAAGCAGCGTCGCGAC
GCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAAGGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGG
TGCCTCATTTACCATCAATCAATTCATTCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTG
GGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGAGTTGCCTGACATTGAGAATGAACATGAA
ATGCATAAAAAAGATTACTTGGTAGATAATTTCGAGTCTGATCGTGATTACACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTGATAATGTTAA
TACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATT
CTGATAGTGAGTCATGTGATAGCCTAGTTGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGAT
AGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTCGATGACTCTGTTAACAATTTCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTT
TCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGGCAGCGTCGAGACACTATGTAAGCAGCGTCGCGACG
CTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAAGGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGT
GCCTCATTTACCATCAATCAATTCATTCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGG
GAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGGTTTTTCGACGGTAGAGATCGAGCTCCCGA
TGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTATGTGTTGTGTTTCATGCGGAA
TGCTTTATATCTAAGATTAGTATGTTTATCAGGTTCAGCGCTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATTTCCGTTGGCTTCACGCTATCTTTCGGGCTAA
GCTAGCAGGTGGCCCGGGAAGGGGTGTGACAATTTGGTATCAAAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCAAGCCCTCCATAGGGGGGACTGTAAACCCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTACTGTGGTTTCGTTGTTGAATTTAAAGTACTTGAGGGAGAG
AGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGATGAAGATAGGAAAAGATCATGCAAAGCCAGCTACAGCAGAATCTTGGTAAGTTGTAGAGTGTTCG
AAAATGAAGCGTTTGATGTGTATTACATTAATTTTGGTTTAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGGCAGCGTCGAGACACTATGTAAGCAGCGTCGCGAC
GCTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAAGGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGG
TGCCTCATTTACCATCAATCAATTCATTCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTG
GGAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGAGTTGCCTGACATTGAGAATGAACATGAA
ATGCATAAAAAAGATTACTTGGTAGATAATTTCGAGTCTGATCGTGATTACACTGAATCTATTGAGTCTGATCTTGACATTCCTGAATGCATGAACCCTGATAATGTTAA
TACCTTTGATTCGTGTCCTGATGATGTATATAGCATAGAAACTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATCTGACCCTGAAGAGCTTGAATTCTTTAATT
CTGATAGTGAGTCATGTGATAGCCTAGTTGAATCATTTTTTAATACTGAGTCTGAGGAATCTGAGGAGCATGTAAATGTTTTTTCTGATGAATGGTCTGGCATGATTGAT
AGGCCATCTTTAGATCCTAGACCGGTAGATATTATAACGCTCGATGACTCTGTTAACAATTTCTTTGTGAATAGAGACTTAGAAAAGAGATTTGATGCTGTTACATATTT
TCTGCAATGTTATTATGATAATCTCTTTAGTGATGATGGGCCAGGGGAAAGTTTTTTTTCTCCCCTGTTTGCGGGCAGCGTCGAGACACTATGTAAGCAGCGTCGCGACG
CTACCCTTTTCGTGTTGCCCAAGCCGCGTGCGTTGCAGCGTCGCGACGCTGTGCAAGGTAGCGTCGCGACGCTACCCCCAATCCGGGCCTATAAAAAGGCACCCTTGGGT
GCCTCATTTACCATCAATCAATTCATTCTTCAATCCATTCTTTCCTTCCTTTGGCTCCTTTGGAGCCTCTCTCAAGGCTTTCTAGCCTTTTTGAGAGAATTCTTTAGTGG
GAAATATTTGGGGAATTTTGGGGAGCATCTTAGGAAGCTCAAAGGAGTGTTCGGCGGAGCTCTGAGCGCCAAGCGAAGGGGTTTTTCGACGGTAGAGATCGAGCTCCCGA
TGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAATCGAGTTATGTCAGGGCTGCACCTCGTATGTGTTGTGTTTCATGCGGAA
TGCTTTATATCTAAGATTAGTATGTTTATCAGGTTCAGCGCTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATTTCCGTTGGCTTCACGCTATCTTTCGGGCTAA
GCTAGCAGGTGGCCCGGGAAGGGGTGTGACAATTTGGTATCAAAGCAGTTAG
Protein sequenceShow/hide protein sequence
MRKPSIGGTVNPRLSLDHLLLSSTVVSLLNLKYLRERVKEEEEEEFRGFEVDEDRKRSCKASYSRILVSCRVFENEAFDVYYINFGLVLRKLWVLEVRGSVETLCKQRRD
ATLFVLPKPRALQRRDAVQGSVATLPPIRAYKKAPLGASFTINQFILQSILSFLWLLWSLSQGFLAFLREFFSGKYLGNFGEHLRKLKGVFGGALSAKRRELPDIENEHE
MHKKDYLVDNFESDRDYTESIESDLDIPECMNPDNVNTFDSCPDDVYSIETDPEELESVHSIESDPEELEFFNSDSESCDSLVESFFNTESEESEEHVNVFSDEWSGMID
RPSLDPRPVDIITLDDSVNNFFVNRDLEKRFDAVTYFLQCYYDNLFSDDGPGESFFSPLFAGSVETLCKQRRDATLFVLPKPRALQRRDAVQGSVATLPPIRAYKKAPLG
ASFTINQFILQSILSFLWLLWSLSQGFLAFLREFFSGKYLGNFGEHLRKLKGVFGGALSAKRRGFSTVEIELPMPDTLPTSAESSRSSSSYFPNRVMSGLHLVCVVFHAE
CFISKISMFIRFSAQEGQQVSLEEDDFRWLHAIFRAKLAGGPGRGVTIWYQSS