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Spg024588 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024588
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:16686958..16687998
RNA-Seq ExpressionSpg024588
SyntenySpg024588
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.5e-2056Show/hide
Query:  MTEILTPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEIL+ RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILTPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1653.85Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-2157.94Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-1850Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEIL+ RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGP-GGDVGSVQIE
        LHA+FRAK AGGP GG  GSV ++
Subjt:  LHAIFRAKLAGGP-GGDVGSVQIE

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-2157.94Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.7e-2056Show/hide
Query:  MTEILTPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEIL+ RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILTPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

A0A5A7V9N3 Reverse transcriptase8.7e-1753.85Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ

A0A5A7VMG9 Reverse transcriptase2.0e-2157.94Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.2e-1850Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEIL+ RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGP-GGDVGSVQIE
        LHA+FRAK AGGP GG  GSV ++
Subjt:  LHAIFRAKLAGGP-GGDVGSVQIE

A0A5D3DX39 Reverse transcriptase2.0e-2157.94Show/hide
Query:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILTPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGACCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGAGAGTGAGTCCAGT
CAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGACCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGAGAGTGAGTCCAGT
CAGGACTAG
Protein sequenceShow/hide protein sequence
MTEILTPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQIELAEYGPSVVESESS
QD