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Spg024590 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024590
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:16803152..16816478
RNA-Seq ExpressionSpg024590
SyntenySpg024590
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-3365.41Show/hide
Query:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR SLQT ELDKT                 VEIELP+PDTLPTSAESS S+SST +ELY ESVH+E  G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG

Query:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        VMPP TSRRRRQNQD  QDPT+ QSERGSST R
Subjt:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.0e-0580.56Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE
        VEIELPVPDTLPTSAES  S+SSTW+ELY E VH E
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-3365.41Show/hide
Query:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR SLQT ELDKT                 VEIELP+PDTLPTSAESS S+SST +ELY ESVH+E  G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG

Query:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        VMPP TSRRRRQNQD  QDPT+ QSERGSST R
Subjt:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.2e-3363.64Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI------------------EGHRVSLEEDDVRWLHAIFRTKLAGGPGGGV
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+                  EG    +  DD+ WLHA+F  K AG PGGGV
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI------------------EGHRVSLEEDDVRWLHAIFRTKLAGGPGGGV

Query:  MPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        MPP TSRRRRQNQD MQ PT+ QSERGSST R
Subjt:  MPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.0e-0580.56Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE
        VEIELPVPDTLPTSAES  S+SSTW+ELY E VH E
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.7e-3257.52Show/hide
Query:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------GHRVSLEED
        RPRGNR+SLQT ELDKT                 VEIELPVPDTLPTSAESS S+SSTW+EL  E VH+E                     G    +  D
Subjt:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------GHRVSLEED

Query:  DVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        +V WLHA+F  K AGGPGGGVMPP TSRRRRQNQD MQDPT+ QSERGSST R
Subjt:  DVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-3070.75Show/hide
Query:  RELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIEGHRVS--LEEDDVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSER
        R+ D  VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+E   ++  + EDDV WLHA+FR K AGGPGGGVMPP TS+RRR NQD MQ PT+ QSER
Subjt:  RELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIEGHRVS--LEEDDVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSER

Query:  GSSTSR
        GSST R
Subjt:  GSSTSR

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.3e-3365.41Show/hide
Query:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR SLQT ELDKT                 VEIELP+PDTLPTSAESS S+SST +ELY ESVH+E  G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG

Query:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        VMPP TSRRRRQNQD  QDPT+ QSERGSST R
Subjt:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

A0A5A7TKT0 Reverse transcriptase4.4e-0580.56Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE
        VEIELPVPDTLPTSAES  S+SSTW+ELY E VH E
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE

A0A5A7TKT0 Reverse transcriptase1.3e-3365.41Show/hide
Query:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR SLQT ELDKT                 VEIELP+PDTLPTSAESS S+SST +ELY ESVH+E  G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE--GHRVSLEEDDVRWLHAIFRTKLAGGPGGG

Query:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        VMPP TSRRRRQNQD  QDPT+ QSERGSST R
Subjt:  VMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

A0A5A7UAH6 CCHC-type domain-containing protein5.9e-3463.64Show/hide
Query:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI------------------EGHRVSLEEDDVRWLHAIFRTKLAGGPGGGV
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+                  EG    +  DD+ WLHA+F  K AG PGGGV
Subjt:  PRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI------------------EGHRVSLEEDDVRWLHAIFRTKLAGGPGGGV

Query:  MPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        MPP TSRRRRQNQD MQ PT+ QSERGSST R
Subjt:  MPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

A0A5D3D150 Reverse transcriptase4.4e-0580.56Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE
        VEIELPVPDTLPTSAES  S+SSTW+ELY E VH E
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNE

A0A5D3D150 Reverse transcriptase4.2e-3257.52Show/hide
Query:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------GHRVSLEED
        RPRGNR+SLQT ELDKT                 VEIELPVPDTLPTSAESS S+SSTW+EL  E VH+E                     G    +  D
Subjt:  RPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIE---------------------GHRVSLEED

Query:  DVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR
        +V WLHA+F  K AGGPGGGVMPP TSRRRRQNQD MQDPT+ QSERGSST R
Subjt:  DVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSR

A0A5D3DX39 Reverse transcriptase6.1e-3170.75Show/hide
Query:  RELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIEGHRVS--LEEDDVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSER
        R+ D  VEIELPVPDTLPTSAESS S+SSTW+ELY+E VH+E   ++  + EDDV WLHA+FR K AGGPGGGVMPP TS+RRR NQD MQ PT+ QSER
Subjt:  RELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIEGHRVS--LEEDDVRWLHAIFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSER

Query:  GSSTSR
        GSST R
Subjt:  GSSTSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTAAGTAGGTTTAATTTCAGGAGAAAGATAAAGAGTAGCAGAGAACCTCGAATATGTGTTGTTTGTGTTCGGGGCAATTCTGGACAAATTGGTTGGGAATCGCG
TTTTCATGTCTGCAGACCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTG
AAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCATCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCC
ATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTCATGCCACCATGTACCAGCAGACGACGCAGGCAGAATCAGGACGAGATGCAGGATCCTACCAAGAGTCA
ATCTGAAAGGGGATCTAGTACCTCGAGAGTTTCCTGCGCCTCCCAGCTGCTTCTCGCACCTTCCCCTCTACCTCTCTCTCGATCGACCTTCTCCTCCAGCCAACTCTCTC
TTTCTCTCGCTCCAACGTCGCGGCCATGTTCCTCCTGCCATCTCTCTCTTTCTTTCGCTCCAGCGCCGCTAGCTAGCTACCGTCGCCGCGTTTCTCCAACTACAGTCGCA
ACCCAAGCCGCCGCAGCCCTCCTTCCGTCGTCGTCAGTCTCGCCGGAGTTTCATCGTGGGTCAGAAGCTTTCTTTACTCGATTCAGTTCAGCCCACTTTGTATTTGATAC
AGATGCAATGATCCAAAACATCCATGTAGGAGACATGCGAGTGGAGGGGCAAGACCGAATGAGGGCTGGGAACATAACAGTACAAGATGGAATGCACTCCTTCCCTTATT
GGGGTCCATTAGGTCCATCTGCTAGCTCCAACTCCTTGCTGGAAAATAATTCCCTCTCCAAGACATCAGTTCCACCCATCGAGATCTCAAACAACCCGGGTGTTCTACTT
GTGGTGGTGTCCTTCAAAGAAGAGATTACAGTAGACGAATTGTACGTGTTTAGGAGCGTCGTGTTGAGAAGTTTGGCCACGTCAAACACTTTAGGGAAATGGTTGGATAT
GCTTGACGTTACGGATACGGGATCCCACAATCCGTTCCAAAGGCTTGAGGATAGCAAGGAAGATCAAGTGGTGGTTCGTGATAGCTTGGAGAAGAAAAACAACAAAAGAG
TTCAACCAATTTTGAGAATTAAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATAAAGGGTTGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGG
GGCATTTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTTTGTCCATAATGAGGGTCAACGGGTATCGT
TAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGTTAACAAGTGGTCCGGGAGGGGGTAATGGAGCTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTAAGTAGGTTTAATTTCAGGAGAAAGATAAAGAGTAGCAGAGAACCTCGAATATGTGTTGTTTGTGTTCGGGGCAATTCTGGACAAATTGGTTGGGAATCGCG
TTTTCATGTCTGCAGACCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTG
AAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGAGGGTCATCGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCC
ATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTCATGCCACCATGTACCAGCAGACGACGCAGGCAGAATCAGGACGAGATGCAGGATCCTACCAAGAGTCA
ATCTGAAAGGGGATCTAGTACCTCGAGAGTTTCCTGCGCCTCCCAGCTGCTTCTCGCACCTTCCCCTCTACCTCTCTCTCGATCGACCTTCTCCTCCAGCCAACTCTCTC
TTTCTCTCGCTCCAACGTCGCGGCCATGTTCCTCCTGCCATCTCTCTCTTTCTTTCGCTCCAGCGCCGCTAGCTAGCTACCGTCGCCGCGTTTCTCCAACTACAGTCGCA
ACCCAAGCCGCCGCAGCCCTCCTTCCGTCGTCGTCAGTCTCGCCGGAGTTTCATCGTGGGTCAGAAGCTTTCTTTACTCGATTCAGTTCAGCCCACTTTGTATTTGATAC
AGATGCAATGATCCAAAACATCCATGTAGGAGACATGCGAGTGGAGGGGCAAGACCGAATGAGGGCTGGGAACATAACAGTACAAGATGGAATGCACTCCTTCCCTTATT
GGGGTCCATTAGGTCCATCTGCTAGCTCCAACTCCTTGCTGGAAAATAATTCCCTCTCCAAGACATCAGTTCCACCCATCGAGATCTCAAACAACCCGGGTGTTCTACTT
GTGGTGGTGTCCTTCAAAGAAGAGATTACAGTAGACGAATTGTACGTGTTTAGGAGCGTCGTGTTGAGAAGTTTGGCCACGTCAAACACTTTAGGGAAATGGTTGGATAT
GCTTGACGTTACGGATACGGGATCCCACAATCCGTTCCAAAGGCTTGAGGATAGCAAGGAAGATCAAGTGGTGGTTCGTGATAGCTTGGAGAAGAAAAACAACAAAAGAG
TTCAACCAATTTTGAGAATTAAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGATAAAGGGTTGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGG
GGCATTTCTGGACAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCTACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTTTGTCCATAATGAGGGTCAACGGGTATCGT
TAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGTTAACAAGTGGTCCGGGAGGGGGTAATGGAGCTGTATAG
Protein sequenceShow/hide protein sequence
MTLSRFNFRRKIKSSREPRICVVCVRGNSGQIGWESRFHVCRPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIEGHRVSLEEDDVRWLHA
IFRTKLAGGPGGGVMPPCTSRRRRQNQDEMQDPTKSQSERGSSTSRVSCASQLLLAPSPLPLSRSTFSSSQLSLSLAPTSRPCSSCHLSLSFAPAPLASYRRRVSPTTVA
TQAAAALLPSSSVSPEFHRGSEAFFTRFSSAHFVFDTDAMIQNIHVGDMRVEGQDRMRAGNITVQDGMHSFPYWGPLGPSASSNSLLENNSLSKTSVPPIEISNNPGVLL
VVVSFKEEITVDELYVFRSVVLRSLATSNTLGKWLDMLDVTDTGSHNPFQRLEDSKEDQVVVRDSLEKKNNKRVQPILRIKEHSGVYKLNQKLYLIKGCREPRICVVCVR
GISGQIGWESRFHFFRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIEFVHNEGQRVSLEEDDVRWLHAIFRTKLTSGPGGGNGAV