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Spg024597 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024597
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold12:19733607..19735850
RNA-Seq ExpressionSpg024597
SyntenySpg024597
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-1550Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N+D K+HS  PSRMKRK S+ INT      K   
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG

Query:  FVFTSSLN
         +FT+ +N
Subjt:  FVFTSSLN

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.0e-1550Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N D K+HS  PSRMKRK S+ INT      K   
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG

Query:  FVFTSSLN
         +FT+ +N
Subjt:  FVFTSSLN

KAA0051228.1 hypothetical protein E6C27_scaffold1250G00350 [Cucumis melo var. makuwa]4.0e-1657.61Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTKV
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N+D K+HS  PSRMKRK SI INTKV
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTKV

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-1549.07Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T++Q++R++ + + + F E N+D K+HS  PSRMKRK S+ INT      K   
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG

Query:  FVFTSSLN
         +FT+ +N
Subjt:  FVFTSSLN

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]1.2e-1557.14Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTK
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N+D K+HS  PSRMKRK SI INTK
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTK

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein7.4e-1650Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N+D K+HS  PSRMKRK S+ INT      K   
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG

Query:  FVFTSSLN
         +FT+ +N
Subjt:  FVFTSSLN

A0A5A7U7F9 Uncharacterized protein2.0e-1657.61Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTKV
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N+D K+HS  PSRMKRK SI INTKV
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTKV

A0A5D3BBF9 Gag protease polyprotein9.7e-1650Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N D K+HS  PSRMKRK S+ INT      K   
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG

Query:  FVFTSSLN
         +FT+ +N
Subjt:  FVFTSSLN

A0A5D3D209 Retrotransposon gag protein2.8e-1549.07Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T++Q++R++ + + + F E N+D K+HS  PSRMKRK S+ INT      K   
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINT------KVEG

Query:  FVFTSSLN
         +FT+ +N
Subjt:  FVFTSSLN

A0A5D3D5Q0 Gag protease polyprotein5.7e-1657.14Show/hide
Query:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTK
        +SM   EEE    TST AR SAF+ LS+STS+K RPST+ FDRLK+T+DQ++R++ + + + F E N+D K+HS  PSRMKRK SI INTK
Subjt:  MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTTGGAACAGAAGAAGAAACTTATAGCTTGACGTCCACCATCGCTCGACATTCAGCCTTCCAAATGCTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTC
AACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACGTGAAAGAAAGGTTGACAATTCAGAAGTTGAATTGTTCGATGAAATAAACAATGACAAGAAGCTTCACA
GTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTATTCTCATAAACACAAAAGTTGAAGGCTTCGTTTTTACTTCATCTTTAAATATTCTAAGGTTGGCAGCGGAAAAC
TTTGCTTCACTACAAATGTTGGCAGTTGAAGACTTTTTGAAGGCTTCGCTTTCGCTTCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGT
GACCACCCCTACAGGATACTATAGTCATCAAAGTGACTGGTCTAGACAGGAGATGAAGTCACTGCAAATGAAGTTGATGACGACCGTTGTAGGCGAGTCTGGTGACCACC
CCTGCAGGATACTACAATCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTTGGAACAGAAGAAGAAACTTATAGCTTGACGTCCACCATCGCTCGACATTCAGCCTTCCAAATGCTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTC
AACAACTGTTTTTGATCGCCTCAAAGTAACAAGCGACCAACGTGAAAGAAAGGTTGACAATTCAGAAGTTGAATTGTTCGATGAAATAAACAATGACAAGAAGCTTCACA
GTACCACGCCGTCACGTATGAAGAGGAAGTTTTCTATTCTCATAAACACAAAAGTTGAAGGCTTCGTTTTTACTTCATCTTTAAATATTCTAAGGTTGGCAGCGGAAAAC
TTTGCTTCACTACAAATGTTGGCAGTTGAAGACTTTTTGAAGGCTTCGCTTTCGCTTCATCTTCAAAAGTTGATGGTTGGCGGCCTCGCTTCTTCTTCAAAAGTTGACGT
GACCACCCCTACAGGATACTATAGTCATCAAAGTGACTGGTCTAGACAGGAGATGAAGTCACTGCAAATGAAGTTGATGACGACCGTTGTAGGCGAGTCTGGTGACCACC
CCTGCAGGATACTACAATCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MSMVGTEEETYSLTSTIARHSAFQMLSVSTSRKCRPSTTVFDRLKVTSDQRERKVDNSEVELFDEINNDKKLHSTTPSRMKRKFSILINTKVEGFVFTSSLNILRLAAEN
FASLQMLAVEDFLKASLSLHLQKLMVGGLASSSKVDVTTPTGYYSHQSDWSRQEMKSLQMKLMTTVVGESGDHPCRILQSSK