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Spg024607 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024607
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold12:17780484..17781664
RNA-Seq ExpressionSpg024607
SyntenySpg024607
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063088.1 uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa]2.5e-2356.12Show/hide
Query:  LGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFKKICWVTNV
        L D SKR+ LK+FL+ I  D+VLIQE+K+ EFD+ F KSLWSSK+ GW   E +G SG +L +WD SKL ++E +KGGYSL++   T  KK CW+TNV
Subjt:  LGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFKKICWVTNV

RVW25440.1 Preprotein translocase subunit SECY, chloroplastic [Vitis vinifera]3.2e-1840.68Show/hide
Query:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS
        E ES  +LS   I+SWNT GLG K+K  ++++FL +  PD+V++QETKR  +D  F  S+W  + + W  + A G SG ++IMWD +K    E + G +S
Subjt:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS

Query:  LTVKCQTRFKKICWVTNV
        +TVK  +  +   W+T+V
Subjt:  LTVKCQTRFKKICWVTNV

RVW64408.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]8.4e-1943.24Show/hide
Query:  LSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQT
        L  M I+SWNT GLG K KR ++++FL    PD+V++QETKR  +D  F  S+W  K + W  + A G SG ++I+WD SKL   E + G +S+TVK  +
Subjt:  LSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQT

Query:  RFKKICWVTNV
          +   W+T+V
Subjt:  RFKKICWVTNV

RVX11537.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.9e-1839.83Show/hide
Query:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS
        E+E+  +     I+SWNT GLG K KR ++++FL    PD+V++QETKR  +D  F  S+W  K + W  + A G  G ++I+WD SK    E + G +S
Subjt:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS

Query:  LTVKCQTRFKKICWVTNV
        +TVK  +  +  CW+T+V
Subjt:  LTVKCQTRFKKICWVTNV

XP_038876676.1 uncharacterized protein LOC120069076 [Benincasa hispida]3.1e-2959.26Show/hide
Query:  MNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFK
        M IV+W+T GLGD SKR++LK+FL+ + PD+VLIQETK+   +  F KSLWSSKE+G  FVEA GKSG LL +WD+SK+ +    K  +SL++KCQT  K
Subjt:  MNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFK

Query:  KICWVTNV
        KICW+TNV
Subjt:  KICWVTNV

TrEMBL top hitse value%identityAlignment
A0A438CP96 LINE-1 retrotransposable element ORF2 protein2.6e-1839.83Show/hide
Query:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS
        E+E+  +     I+SWNT GLG K KR ++++FL    PD+V++QETKR  +D  F  S+W+ K + W  + A G SG ++I+WD SK    E + G +S
Subjt:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS

Query:  LTVKCQTRFKKICWVTNV
        +TVK  +  +   W+T+V
Subjt:  LTVKCQTRFKKICWVTNV

A0A438CQF2 Preprotein translocase subunit SECY, chloroplastic1.5e-1840.68Show/hide
Query:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS
        E ES  +LS   I+SWNT GLG K+K  ++++FL +  PD+V++QETKR  +D  F  S+W  + + W  + A G SG ++IMWD +K    E + G +S
Subjt:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS

Query:  LTVKCQTRFKKICWVTNV
        +TVK  +  +   W+T+V
Subjt:  LTVKCQTRFKKICWVTNV

A0A438FWU5 LINE-1 retrotransposable element ORF2 protein4.1e-1943.24Show/hide
Query:  LSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQT
        L  M I+SWNT GLG K KR ++++FL    PD+V++QETKR  +D  F  S+W  K + W  + A G SG ++I+WD SKL   E + G +S+TVK  +
Subjt:  LSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQT

Query:  RFKKICWVTNV
          +   W+T+V
Subjt:  RFKKICWVTNV

A0A438JRF4 LINE-1 retrotransposable element ORF2 protein9.0e-1939.83Show/hide
Query:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS
        E+E+  +     I+SWNT GLG K KR ++++FL    PD+V++QETKR  +D  F  S+W  K + W  + A G  G ++I+WD SK    E + G +S
Subjt:  EDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYS

Query:  LTVKCQTRFKKICWVTNV
        +TVK  +  +  CW+T+V
Subjt:  LTVKCQTRFKKICWVTNV

A0A5A7V639 Uncharacterized protein1.2e-2356.12Show/hide
Query:  LGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFKKICWVTNV
        L D SKR+ LK+FL+ I  D+VLIQE+K+ EFD+ F KSLWSSK+ GW   E +G SG +L +WD SKL ++E +KGGYSL++   T  KK CW+TNV
Subjt:  LGDKSKRVVLKKFLQNICPDLVLIQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFKKICWVTNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAAAAAGGGTTGAGATGCCATCTGTTTCTCGTGATCAGAAGGATCATAATGAGGTATTGGGTTCTCCAAAAGTTGCTTTACTGCATGAGGAGAACATTAATAACGACGT
TTCTAGTGAGTTTAATGCAAGGTTAAACGCTTCTTTTGTTAGAGGCGTTGTTTGTTCTTCTATTTTGAAAGAGCATTCTTCCTTGGATTTAGAAGATGAGTCAGTGGTTA
GTTTAAGCATAATGAATATTGTTTCATGGAATACTTGGGGTCTTGGTGATAAATCCAAAAGGGTGGTGCTGAAGAAATTCCTTCAAAATATTTGTCCTGATTTAGTTTTA
ATTCAAGAAACCAAACGGTCAGAATTTGATTTGGAATTCTTTAAATCTCTATGGAGTTCAAAGGAAATTGGTTGGACTTTTGTGGAAGCTTATGGAAAATCAGGTCAGCT
TCTTATTATGTGGGATGAGAGCAAATTATCAATGTTGGAATTCATAAAGGGAGGTTATTCTCTCACAGTTAAATGCCAGACTCGGTTTAAGAAAATATGTTGGGTGACAA
ATGTGTAA
mRNA sequenceShow/hide mRNA sequence
GGAAAAAGGGTTGAGATGCCATCTGTTTCTCGTGATCAGAAGGATCATAATGAGGTATTGGGTTCTCCAAAAGTTGCTTTACTGCATGAGGAGAACATTAATAACGACGT
TTCTAGTGAGTTTAATGCAAGGTTAAACGCTTCTTTTGTTAGAGGCGTTGTTTGTTCTTCTATTTTGAAAGAGCATTCTTCCTTGGATTTAGAAGATGAGTCAGTGGTTA
GTTTAAGCATAATGAATATTGTTTCATGGAATACTTGGGGTCTTGGTGATAAATCCAAAAGGGTGGTGCTGAAGAAATTCCTTCAAAATATTTGTCCTGATTTAGTTTTA
ATTCAAGAAACCAAACGGTCAGAATTTGATTTGGAATTCTTTAAATCTCTATGGAGTTCAAAGGAAATTGGTTGGACTTTTGTGGAAGCTTATGGAAAATCAGGTCAGCT
TCTTATTATGTGGGATGAGAGCAAATTATCAATGTTGGAATTCATAAAGGGAGGTTATTCTCTCACAGTTAAATGCCAGACTCGGTTTAAGAAAATATGTTGGGTGACAA
ATGTGTAA
Protein sequenceShow/hide protein sequence
GKRVEMPSVSRDQKDHNEVLGSPKVALLHEENINNDVSSEFNARLNASFVRGVVCSSILKEHSSLDLEDESVVSLSIMNIVSWNTWGLGDKSKRVVLKKFLQNICPDLVL
IQETKRSEFDLEFFKSLWSSKEIGWTFVEAYGKSGQLLIMWDESKLSMLEFIKGGYSLTVKCQTRFKKICWVTNV