; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024611 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024611
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:18961413..18963395
RNA-Seq ExpressionSpg024611
SyntenySpg024611
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]9.8e-1748.28Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIKLQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSGGGVT
        PRGNR SLQT EL KT                 VEIE PV D LP SA+S           S  R+A       + EDDVCW H + R K  G  GGGVT
Subjt:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIKLQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSGGGVT

Query:  NLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
                 W      VMPPR+SRRRRQN+D TQDPTQGQSERGS
Subjt:  NLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-2048.32Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG
        PRGNRPSLQT EL KT                 VEIE P+PD LP SA+S +      L+L+ +  +V   + G    +  DDVCW HA+ R K  G  G
Subjt:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG

Query:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
        GG                  VMPPRTSRRRRQNQDGTQDPTQGQSERGS
Subjt:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]4.4e-1737.33Show/hide
Query:  RRKVEDNREARIWIGCIRGISGQ-IRWESHFHSLKPRGNRPSLQTRELAKT---------------------------------VEIEHPVPDKLPKSAK
        R KV     A++    +  + G+ I++ +    + PRGNRPSLQT EL KT                                 VEIE PVPD LP SAK
Subjt:  RRKVEDNREARIWIGCIRGISGQ-IRWESHFHSLKPRGNRPSLQTRELAKT---------------------------------VEIEHPVPDKLPKSAK

Query:  -----------------SFQIKLQLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSGGGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQ
                           +  ++LF KPS VR A +    G    +  DDVC  HA+ + K  G  GGG                  VMPPRTSRRRRQ
Subjt:  -----------------SFQIKLQLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSGGGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQ

Query:  NQDGTQDPTQGQSERGS
        NQDGTQDPTQGQSE GS
Subjt:  NQDGTQDPTQGQSERGS

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]8.6e-2148.99Show/hide
Query:  SLKPRGNRPSLQTRELAKTVEIEHPVPDKLPKSAKSFQ------IKL--------QLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSG
        S+ PRGNRP+L T +L KTVEIE PVPD LP SA+S +      ++L         LF KPS VR A +    G    +  DD+CW HA+   K  G+ G
Subjt:  SLKPRGNRPSLQTRELAKTVEIEHPVPDKLPKSAKSFQ------IKL--------QLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSG

Query:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
        GG                  VMPPRTSRRRRQNQDG Q PTQGQSERGS
Subjt:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.3e-2048.32Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG
        PRGNRPSLQT EL KT                 VEIE P+PD LP SA+S +      L+L+ +  +V   + G    +  DDVCW HA+ R K  G  G
Subjt:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG

Query:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
        GG                  VMPPRTSRRRRQNQDGTQDPTQGQSERGS
Subjt:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.6e-2048.32Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG
        PRGNRPSLQT EL KT                 VEIE P+PD LP SA+S +      L+L+ +  +V   + G    +  DDVCW HA+ R K  G  G
Subjt:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG

Query:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
        GG                  VMPPRTSRRRRQNQDGTQDPTQGQSERGS
Subjt:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

A0A5A7TPS6 Retrotrans_gag domain-containing protein2.1e-1737.33Show/hide
Query:  RRKVEDNREARIWIGCIRGISGQ-IRWESHFHSLKPRGNRPSLQTRELAKT---------------------------------VEIEHPVPDKLPKSAK
        R KV     A++    +  + G+ I++ +    + PRGNRPSLQT EL KT                                 VEIE PVPD LP SAK
Subjt:  RRKVEDNREARIWIGCIRGISGQ-IRWESHFHSLKPRGNRPSLQTRELAKT---------------------------------VEIEHPVPDKLPKSAK

Query:  -----------------SFQIKLQLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSGGGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQ
                           +  ++LF KPS VR A +    G    +  DDVC  HA+ + K  G  GGG                  VMPPRTSRRRRQ
Subjt:  -----------------SFQIKLQLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSGGGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQ

Query:  NQDGTQDPTQGQSERGS
        NQDGTQDPTQGQSE GS
Subjt:  NQDGTQDPTQGQSERGS

A0A5A7UAH6 CCHC-type domain-containing protein4.1e-2148.99Show/hide
Query:  SLKPRGNRPSLQTRELAKTVEIEHPVPDKLPKSAKSFQ------IKL--------QLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSG
        S+ PRGNRP+L T +L KTVEIE PVPD LP SA+S +      ++L         LF KPS VR A +    G    +  DD+CW HA+   K  G+ G
Subjt:  SLKPRGNRPSLQTRELAKTVEIEHPVPDKLPKSAKSFQ------IKL--------QLFPKPSYVRTALH----GQQVSLEEDDVCWFHAISRTKLGGNSG

Query:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
        GG                  VMPPRTSRRRRQNQDG Q PTQGQSERGS
Subjt:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.7e-1748.28Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIKLQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSGGGVT
        PRGNR SLQT EL KT                 VEIE PV D LP SA+S           S  R+A       + EDDVCW H + R K  G  GGGVT
Subjt:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIKLQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSGGGVT

Query:  NLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
                 W      VMPPR+SRRRRQN+D TQDPTQGQSERGS
Subjt:  NLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

A0A5D3D150 Reverse transcriptase1.6e-2048.32Show/hide
Query:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG
        PRGNRPSLQT EL KT                 VEIE P+PD LP SA+S +      L+L+ +  +V   + G    +  DDVCW HA+ R K  G  G
Subjt:  PRGNRPSLQTRELAKT-----------------VEIEHPVPDKLPKSAKSFQIK----LQLFPKPSYVRTALHGQQVSLEEDDVCWFHAISRTKLGGNSG

Query:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS
        GG                  VMPPRTSRRRRQNQDGTQDPTQGQSERGS
Subjt:  GGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGATAACAGAGAAGCACGAATTTGGATTGGTTGTATTCGGGGGATTTCTGGACAAATCCGTTGGGAATCGCA
TTTTCATTCCTTGAAGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCACCCGGTGCCTGATAAACTGCCAAAGTCTGCTA
AAAGCTTCCAAATCAAGCTCCAGTTATTTCCCAAACCGAGTTATGTCAGGACTGCACTTCATGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGTTTCACGCC
ATCTCCCGGACTAAGCTAGGAGGTAATTCGGGAGGGGGTGTGACAAACTTGGTATCAGAGCAGTTAGCTCCATGGGAAATGAGACAAAGCAGAGTCATGCCACCACGTAC
CAGCAGACGACGCAGGCAGAATCAAGACGGGACGCAGGATCCTACCCAGGGTCAATCTGAAAGGGGATCTTATAAATATCGACTTAGACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGATAACAGAGAAGCACGAATTTGGATTGGTTGTATTCGGGGGATTTCTGGACAAATCCGTTGGGAATCGCA
TTTTCATTCCTTGAAGCCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCACCCGGTGCCTGATAAACTGCCAAAGTCTGCTA
AAAGCTTCCAAATCAAGCTCCAGTTATTTCCCAAACCGAGTTATGTCAGGACTGCACTTCATGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGTTTCACGCC
ATCTCCCGGACTAAGCTAGGAGGTAATTCGGGAGGGGGTGTGACAAACTTGGTATCAGAGCAGTTAGCTCCATGGGAAATGAGACAAAGCAGAGTCATGCCACCACGTAC
CAGCAGACGACGCAGGCAGAATCAAGACGGGACGCAGGATCCTACCCAGGGTCAATCTGAAAGGGGATCTTATAAATATCGACTTAGACCCTAG
Protein sequenceShow/hide protein sequence
MTRSRFNFRRKVEDNREARIWIGCIRGISGQIRWESHFHSLKPRGNRPSLQTRELAKTVEIEHPVPDKLPKSAKSFQIKLQLFPKPSYVRTALHGQQVSLEEDDVCWFHA
ISRTKLGGNSGGGVTNLVSEQLAPWEMRQSRVMPPRTSRRRRQNQDGTQDPTQGQSERGSYKYRLRP