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Spg024614 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024614
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:19834877..19842913
RNA-Seq ExpressionSpg024614
SyntenySpg024614
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2749.38Show/hide
Query:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE
        + STGFSSKPGG LVFS  LSI+       ++   I   W RGNR  LQT ELDK                  VEIELP+PDTLPTSAESS ++SSTW+E
Subjt:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE

Query:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT
        LY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P+
Subjt:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.0e-2646.95Show/hide
Query:  VEDHGEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIWTRGNRSSLQTEELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--
        +E+   +ST F SK GG LVFS  L           SI  RGNR +L T +LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +     
Subjt:  VEDHGEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIWTRGNRSSLQTEELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--

Query:  --------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGIKPTLTCLKYQE----MYNMTRARSE
                EG    +  DD+ WLHA+F AK AG PGGG+ P  T  + ++    M   T+ +SE
Subjt:  --------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGIKPTLTCLKYQE----MYNMTRARSE

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.1e-2648.52Show/hide
Query:  GEKSTGFSSKPGGSLVFSSVLSI----------------RGCTSRIRSSIWTRGNRSSLQTEELDKT---------------VEIELPVPDTLPTSAESS
        G KSTGFSSKPGG LVFS  LSI                R        S   RGNR SLQT ELDKT               V IELPVPD LPTSAESS
Subjt:  GEKSTGFSSKPGGSLVFSSVLSI----------------RGCTSRIRSSIWTRGNRSSLQTEELDKT---------------VEIELPVPDTLPTSAESS

Query:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI
         ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG+
Subjt:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]6.3e-2751.61Show/hide
Query:  GEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIW--TRGNRSSLQTEELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIES
        G KSTGFSSKPGG LV S  LSI     ++   ++   RGNR SLQT ELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ES
Subjt:  GEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIW--TRGNRSSLQTEELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIES

Query:  VHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI
        VH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG+
Subjt:  VHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-2749.38Show/hide
Query:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE
        + STGFSSKPGG LVFS  LSI+       ++   I   W RGNR  LQT ELDK                  VEIELP+PDTLPTSAESS ++SSTW+E
Subjt:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE

Query:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT
        LY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P+
Subjt:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.8e-2749.38Show/hide
Query:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE
        + STGFSSKPGG LVFS  LSI+       ++   I   W RGNR  LQT ELDK                  VEIELP+PDTLPTSAESS ++SSTW+E
Subjt:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE

Query:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT
        LY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P+
Subjt:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT

A0A5A7UAH6 CCHC-type domain-containing protein3.4e-2646.95Show/hide
Query:  VEDHGEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIWTRGNRSSLQTEELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--
        +E+   +ST F SK GG LVFS  L           SI  RGNR +L T +LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +     
Subjt:  VEDHGEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIWTRGNRSSLQTEELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--

Query:  --------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGIKPTLTCLKYQE----MYNMTRARSE
                EG    +  DD+ WLHA+F AK AG PGGG+ P  T  + ++    M   T+ +SE
Subjt:  --------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGIKPTLTCLKYQE----MYNMTRARSE

A0A5A7UT17 CCHC-type domain-containing protein4.4e-2648.52Show/hide
Query:  GEKSTGFSSKPGGSLVFSSVLSI----------------RGCTSRIRSSIWTRGNRSSLQTEELDKT---------------VEIELPVPDTLPTSAESS
        G KSTGFSSKPGG LVFS  LSI                R        S   RGNR SLQT ELDKT               V IELPVPD LPTSAESS
Subjt:  GEKSTGFSSKPGGSLVFSSVLSI----------------RGCTSRIRSSIWTRGNRSSLQTEELDKT---------------VEIELPVPDTLPTSAESS

Query:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI
         ++SSTW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG+
Subjt:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI

A0A5D3CJX3 CCHC-type domain-containing protein3.1e-2751.61Show/hide
Query:  GEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIW--TRGNRSSLQTEELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIES
        G KSTGFSSKPGG LV S  LSI     ++   ++   RGNR SLQT ELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ES
Subjt:  GEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIW--TRGNRSSLQTEELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIES

Query:  VHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI
        VH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG+
Subjt:  VHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGI

A0A5D3DR18 Gag/pol protein1.8e-2749.38Show/hide
Query:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE
        + STGFSSKPGG LVFS  LSI+       ++   I   W RGNR  LQT ELDK                  VEIELP+PDTLPTSAESS ++SSTW+E
Subjt:  EKSTGFSSKPGGSLVFSSVLSIR---GCTSRIRSSI---WTRGNRSSLQTEELDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVE

Query:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT
        LY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGGPGGG+ P+
Subjt:  LYIESVHIVNVLFNVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGIKPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTAACCCACACAGTTCCAACGAACTCAAGCAACCCAAGACGACAGGTTGGAATTGGAAGTAAGCCCAAGAAAGAAAATGAGGATAACCGGGTTGAGGATCATGG
AGAAAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTAGTGTTTTGAGCATTCGGGGGTGTACAAGTCGAATTAGAAGCTCTATTTGGACAAGAG
GAAATAGGTCGAGTCTACAAACCGAGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGT
ACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
CATCTTTCGGGCTAAACTAGCAGGTGGTCCGGGAGGGGGTATCAAGCCAACCTTGACGTGTCTGAAGTATCAAGAAATGTATAACATGACGCGTGCCCGTAGTGAAGTTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTAACCCACACAGTTCCAACGAACTCAAGCAACCCAAGACGACAGGTTGGAATTGGAAGTAAGCCCAAGAAAGAAAATGAGGATAACCGGGTTGAGGATCATGG
AGAAAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTAGTGTTTTGAGCATTCGGGGGTGTACAAGTCGAATTAGAAGCTCTATTTGGACAAGAG
GAAATAGGTCGAGTCTACAAACCGAGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGT
ACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
CATCTTTCGGGCTAAACTAGCAGGTGGTCCGGGAGGGGGTATCAAGCCAACCTTGACGTGTCTGAAGTATCAAGAAATGTATAACATGACGCGTGCCCGTAGTGAAGTTT
AA
Protein sequenceShow/hide protein sequence
MAVTHTVPTNSSNPRRQVGIGSKPKKENEDNRVEDHGEKSTGFSSKPGGSLVFSSVLSIRGCTSRIRSSIWTRGNRSSLQTEELDKTVEIELPVPDTLPTSAESSRTSSS
TWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGIKPTLTCLKYQEMYNMTRARSEV