; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024619 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024619
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationscaffold12:18765470..18769456
RNA-Seq ExpressionSpg024619
SyntenySpg024619
Gene Ontology termsGO:0009059 - macromolecule biosynthetic process (biological process)
GO:0010467 - gene expression (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0044271 - cellular nitrogen compound biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]1.8e-0756.14Show/hide
Query:  SGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAEL
        S CGRK+ IEER G+R  K+EL++  S WVRDCL AAA++ NP  FWR+R L+   L
Subjt:  SGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAEL

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]3.1e-2036.6Show/hide
Query:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIY
        MGK+ IDRK F +      RK+ IEER G+   K+EL    S WVRDCL  AA   N   FW QRRL+ A +FFQVL+NE+GRF +LS++SF+ ++T I+
Subjt:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIY

Query:  VPEGFKEEGLGSFQWIASDGKESQFMFQRGS-KVKVGNPRGFWRHRRLDNAMLFFQVLQNERGRFGLLLRDSFRWKRTAIYVPEGFKGKGWGVL
        +PEG +  G     W +  G+ S  +   G+   K G+     ++R     +   ++++      G  +  +F WK T I + +      WG L
Subjt:  VPEGFKEEGLGSFQWIASDGKESQFMFQRGS-KVKVGNPRGFWRHRRLDNAMLFFQVLQNERGRFGLLLRDSFRWKRTAIYVPEGFKGKGWGVL

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein1.1e-1049.37Show/hide
Query:  VELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPEGFKEEGLGSF
        +EL    S  VRDCL  AA   NP  FW +R L  A +FFQVL+N RGRF +LS++SF+ K+T I++ +G K +G  SF
Subjt:  VELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPEGFKEEGLGSF

A0A0A0KGZ5 Uncharacterized protein7.8e-0953.03Show/hide
Query:  CGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQV-LQNERG
        CGRK+ IEE  G+R  K+EL++ AS WV DCL AAA++ NP GFW +R L+   +FFQ  L+  RG
Subjt:  CGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQV-LQNERG

A0A0A0LY03 Uncharacterized protein8.9e-1332.68Show/hide
Query:  GCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPEGFKEEGLGSF-QW
        G  RK+ IEER G++  K++L +    WV D L AAA      G W++++LD   +FFQVL+N   RF ++S+DSF+ ++  +++ EG +E G  S  + 
Subjt:  GCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPEGFKEEGLGSF-QW

Query:  IASDGKESQFMFQRG-------SKVKVGNPRGFWRHRRLDNAMLFFQVLQNER
        I + G+        G       S  ++ +P+G  R R+ + + L    L+N R
Subjt:  IASDGKESQFMFQRG-------SKVKVGNPRGFWRHRRLDNAMLFFQVLQNER

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X28.6e-0856.14Show/hide
Query:  SGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAEL
        S CGRK+ IEER G+R  K+EL++  S WVRDCL AAA++ NP  FWR+R L+   L
Subjt:  SGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAEL

A0A5D3CQQ0 Uncharacterized protein1.5e-2036.6Show/hide
Query:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIY
        MGK+ IDRK F +      RK+ IEER G+   K+EL    S WVRDCL  AA   N   FW QRRL+ A +FFQVL+NE+GRF +LS++SF+ ++T I+
Subjt:  MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIY

Query:  VPEGFKEEGLGSFQWIASDGKESQFMFQRGS-KVKVGNPRGFWRHRRLDNAMLFFQVLQNERGRFGLLLRDSFRWKRTAIYVPEGFKGKGWGVL
        +PEG +  G     W +  G+ S  +   G+   K G+     ++R     +   ++++      G  +  +F WK T I + +      WG L
Subjt:  VPEGFKEEGLGSFQWIASDGKESQFMFQRGS-KVKVGNPRGFWRHRRLDNAMLFFQVLQNERGRFGLLLRDSFRWKRTAIYVPEGFKGKGWGVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G32080.1 purin-rich alpha 11.2e-0426.52Show/hide
Query:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPE
        ++ KLF   L ++  GR L I E+       + +      W  D             F ++ +LD+   +F + +N RGRF  +S  S    R+ I VP 
Subjt:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPE

Query:  GFK-EEGLGSFQWIASDGKESQFMFQRGSKVK
        G   +EG  +F+ I ++  E+  +F   ++VK
Subjt:  GFK-EEGLGSFQWIASDGKESQFMFQRGSKVK

AT2G32080.2 purin-rich alpha 15.7e-0426.4Show/hide
Query:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPE
        ++ KLF   L ++  GR L I E+       + +      W  D             F ++ +LD+   +F + +N RGRF  +S  S    R+ I VP 
Subjt:  IDRKLFC--LWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPE

Query:  GFK-EEGLGSFQWIASDGKESQFMF
        G   +EG  +F+ I ++  E+  +F
Subjt:  GFK-EEGLGSFQWIASDGKESQFMF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGGTGTTCATCGATAGGAAACTGTTCTGTTTGTGGAAGAGCGGATGTGGTAGGAAGTTGCTGATAGAAGAGAGAAGAGGAAAGAGAGTTCACAAGGTGGAGCT
CAAGATCGAGGCATCTATATGGGTTCGTGACTGTTTAGAGGCAGCTGCGAAAGTTCGGAACCCTCATGGTTTTTGGAGGCAGAGGAGGCTGGATAATGCAGAGTTATTTT
TTCAGGTTTTACAAAATGAGAGAGGAAGGTTTGGGCTCCTTTCAATGGATAGCTTCAGATGGAAAAGAACCGCGATTTATGTTCCAGAGGGGTTCAAAGAGGAAGGTTTG
GGCTCCTTTCAATGGATAGCTTCAGATGGAAAAGAATCGCAATTTATGTTCCAGAGGGGTTCAAAGGTAAAGGTTGGGAACCCTCGTGGTTTTTGGAGGCATAGGAGGCT
GGATAATGCGATGTTATTTTTTCAGGTTTTACAAAATGAGAGAGGAAGGTTTGGGCTCCTTTTAAGGGATAGCTTCAGATGGAAAAGAACCGCGATTTATGTTCCAGAGG
GGTTCAAAGGTAAGGGTTGGGGAGTGTTAGCGGGGGAAATTTCAAATGTGTTATACGGATCCAATAAAATAGGGAAATCGTCAACGGGGCCCTCTGGAAAATCTGTTCGA
AGGGCAGAAGATAAAACAGTCCAGAATGCTCAGAACGGGGAGGTGGAAACCTCTGCTGTGGATGAAGTGCTCAATAAGTCTGAGAGTTTGATTTTGCCTTCGAGTGCTCG
GCGACGGTCATTATTGAAAGCAGCCAAGAAGTTGGTTTCCGCGGTTAGGGCCAGAGGAGAGTTAGGATTTTCAGTTCATGAATGGAACTTTAAGGTGTTGGCTGAGGGTC
ACCGACAAGCGTTCTCTGGTGGCAGAGTGACGGCCCTGGATATCCCGCCGTTCCTTTGGACAAAAAGCTTGATCGCAGCAGTTGCGAAGCTCTATGGAGGAATTAAAGAA
GACGGAGATCTGGATGGAGATGACGTATCGATGAAGGAAATTGGTTATCGTCGTCAGTCGGAGAATGAGGAGATCGAGGTGGTCGGAAGCAAGCCTGGTAAAGCTGAGAA
AATCGTCTTTCTTCCGCCAGAAGATGCAGTCGTAGGGGGTCAGATAGTTCAGAAGAGTAGGGATCACGTGAAGTCGGTGGGGAACGAGAATAATACTAGAAAACCTGAGA
AGATTGGGCCTGTGGGCCTGAAAGAAGTTAATCCAAGCCCTTTAAGTGTTCACCAAACTGGGCCTAGCGGACATCCAAGCCTGAGCGATTTGCCCTTCCAGCCCTTTAAA
GGGAAGATGGAGGGCTATCCAAATCCCAACACCAAGGCGGGGAAGGAGAAATCGAAGGAAGTTACTCCTCCTAATAGACGGAAATACAACGGCCTGAAGTCCTATCGGAT
TGAGAGAGAGCGAAAAGACGAAAAGGCCTATGACAGCAGAGAGATCGAATTGGAGAGAGCTCTAGGAGTAGGACCTTCGGATCGTGTGTTGGGTGAAGAAGGATATCAAT
CTAACTCGTCGATTATTAGCTACTCTGATGACGAATCTTTTTTATCAACTCCCTTCGTCGTCGAACCAGGTCAGGTGAGATTTCATAACTTGTTCAACGAAGGAGAAGCA
TCCGATCAAAACAGAGCACATGGTAAAGTGGCAGGAGAAGGAGAGGAAGGGCATAAGGAGAAGTATTCTGTGGCTGAAGATGTCAGGACTAATGAAGCGGCAGTTAATCA
CGCAAAGCAGTCGACTGAATTCCAGCAAAACAGTCAATCAACAGAGCCTATTTCTCAGTCCATTATAAAGGCAGGGGGGTTCTCTCATCCGTGGGCAGTCACTTCTCCTT
ATTCTTGTGTCTGGCCTCATTCGAGTAATGGTGTTGGGGGTCCTCTGTTTCCTTGTGCGGTGTCGGCCAGTCCATGGGTGTTCGGGTTGTCTAATGGATTTGTTAACTCT
GGGAGCTTGCCTAATCCTTTCATGGTTAGCCCTTCTTCGAGTCTTGGGGATACTCTGTCTCAGCCAGTCAGTGTGTCGTGGGGGGCTAAGGATTTGCCTAATTCCTCGAA
TGTGGGTGCCATAGGATGTATAGTGGAGGGGGGAAGCTCGCCATTACCTGATAGGGAGACGGGAGGAGAATCAATTATGCTCGGGAGAGATAGTTGTGATAAAAGAGCGC
GGAGTCTAAAATTTGATGAAATTATAAAAGGACTTCAGACCCCAAAGGAAGTTAGTGAGGAGGGATCCACTTCCATAGGATGTCTAGTGAGTCATGTGGCCGATGATTCA
TTGGCACCTATTCAGGAGCGTATTTCTTTCAATCTTGTTGAGGATGAGCATTTAGGGGTGAGTTGCATGAACAGTGGAGAAGAATTGGAGAGTTGTAGCACCTTTCAAGA
ACACGTTTGTGAGGAAGAAAAAGAAAATGAGCTTGCAGTGACAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTTGATCAACCTTCGTCTGTTTTATCTTCTTTATCCTTTG
TTGAATATGAT
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGGTGTTCATCGATAGGAAACTGTTCTGTTTGTGGAAGAGCGGATGTGGTAGGAAGTTGCTGATAGAAGAGAGAAGAGGAAAGAGAGTTCACAAGGTGGAGCT
CAAGATCGAGGCATCTATATGGGTTCGTGACTGTTTAGAGGCAGCTGCGAAAGTTCGGAACCCTCATGGTTTTTGGAGGCAGAGGAGGCTGGATAATGCAGAGTTATTTT
TTCAGGTTTTACAAAATGAGAGAGGAAGGTTTGGGCTCCTTTCAATGGATAGCTTCAGATGGAAAAGAACCGCGATTTATGTTCCAGAGGGGTTCAAAGAGGAAGGTTTG
GGCTCCTTTCAATGGATAGCTTCAGATGGAAAAGAATCGCAATTTATGTTCCAGAGGGGTTCAAAGGTAAAGGTTGGGAACCCTCGTGGTTTTTGGAGGCATAGGAGGCT
GGATAATGCGATGTTATTTTTTCAGGTTTTACAAAATGAGAGAGGAAGGTTTGGGCTCCTTTTAAGGGATAGCTTCAGATGGAAAAGAACCGCGATTTATGTTCCAGAGG
GGTTCAAAGGTAAGGGTTGGGGAGTGTTAGCGGGGGAAATTTCAAATGTGTTATACGGATCCAATAAAATAGGGAAATCGTCAACGGGGCCCTCTGGAAAATCTGTTCGA
AGGGCAGAAGATAAAACAGTCCAGAATGCTCAGAACGGGGAGGTGGAAACCTCTGCTGTGGATGAAGTGCTCAATAAGTCTGAGAGTTTGATTTTGCCTTCGAGTGCTCG
GCGACGGTCATTATTGAAAGCAGCCAAGAAGTTGGTTTCCGCGGTTAGGGCCAGAGGAGAGTTAGGATTTTCAGTTCATGAATGGAACTTTAAGGTGTTGGCTGAGGGTC
ACCGACAAGCGTTCTCTGGTGGCAGAGTGACGGCCCTGGATATCCCGCCGTTCCTTTGGACAAAAAGCTTGATCGCAGCAGTTGCGAAGCTCTATGGAGGAATTAAAGAA
GACGGAGATCTGGATGGAGATGACGTATCGATGAAGGAAATTGGTTATCGTCGTCAGTCGGAGAATGAGGAGATCGAGGTGGTCGGAAGCAAGCCTGGTAAAGCTGAGAA
AATCGTCTTTCTTCCGCCAGAAGATGCAGTCGTAGGGGGTCAGATAGTTCAGAAGAGTAGGGATCACGTGAAGTCGGTGGGGAACGAGAATAATACTAGAAAACCTGAGA
AGATTGGGCCTGTGGGCCTGAAAGAAGTTAATCCAAGCCCTTTAAGTGTTCACCAAACTGGGCCTAGCGGACATCCAAGCCTGAGCGATTTGCCCTTCCAGCCCTTTAAA
GGGAAGATGGAGGGCTATCCAAATCCCAACACCAAGGCGGGGAAGGAGAAATCGAAGGAAGTTACTCCTCCTAATAGACGGAAATACAACGGCCTGAAGTCCTATCGGAT
TGAGAGAGAGCGAAAAGACGAAAAGGCCTATGACAGCAGAGAGATCGAATTGGAGAGAGCTCTAGGAGTAGGACCTTCGGATCGTGTGTTGGGTGAAGAAGGATATCAAT
CTAACTCGTCGATTATTAGCTACTCTGATGACGAATCTTTTTTATCAACTCCCTTCGTCGTCGAACCAGGTCAGGTGAGATTTCATAACTTGTTCAACGAAGGAGAAGCA
TCCGATCAAAACAGAGCACATGGTAAAGTGGCAGGAGAAGGAGAGGAAGGGCATAAGGAGAAGTATTCTGTGGCTGAAGATGTCAGGACTAATGAAGCGGCAGTTAATCA
CGCAAAGCAGTCGACTGAATTCCAGCAAAACAGTCAATCAACAGAGCCTATTTCTCAGTCCATTATAAAGGCAGGGGGGTTCTCTCATCCGTGGGCAGTCACTTCTCCTT
ATTCTTGTGTCTGGCCTCATTCGAGTAATGGTGTTGGGGGTCCTCTGTTTCCTTGTGCGGTGTCGGCCAGTCCATGGGTGTTCGGGTTGTCTAATGGATTTGTTAACTCT
GGGAGCTTGCCTAATCCTTTCATGGTTAGCCCTTCTTCGAGTCTTGGGGATACTCTGTCTCAGCCAGTCAGTGTGTCGTGGGGGGCTAAGGATTTGCCTAATTCCTCGAA
TGTGGGTGCCATAGGATGTATAGTGGAGGGGGGAAGCTCGCCATTACCTGATAGGGAGACGGGAGGAGAATCAATTATGCTCGGGAGAGATAGTTGTGATAAAAGAGCGC
GGAGTCTAAAATTTGATGAAATTATAAAAGGACTTCAGACCCCAAAGGAAGTTAGTGAGGAGGGATCCACTTCCATAGGATGTCTAGTGAGTCATGTGGCCGATGATTCA
TTGGCACCTATTCAGGAGCGTATTTCTTTCAATCTTGTTGAGGATGAGCATTTAGGGGTGAGTTGCATGAACAGTGGAGAAGAATTGGAGAGTTGTAGCACCTTTCAAGA
ACACGTTTGTGAGGAAGAAAAAGAAAATGAGCTTGCAGTGACAGAGGAAGTTCAGGAGGTAGAGTTTGAGGTTGATCAACCTTCGTCTGTTTTATCTTCTTTATCCTTTG
TTGAATATGAT
Protein sequenceShow/hide protein sequence
MGKVFIDRKLFCLWKSGCGRKLLIEERRGKRVHKVELKIEASIWVRDCLEAAAKVRNPHGFWRQRRLDNAELFFQVLQNERGRFGLLSMDSFRWKRTAIYVPEGFKEEGL
GSFQWIASDGKESQFMFQRGSKVKVGNPRGFWRHRRLDNAMLFFQVLQNERGRFGLLLRDSFRWKRTAIYVPEGFKGKGWGVLAGEISNVLYGSNKIGKSSTGPSGKSVR
RAEDKTVQNAQNGEVETSAVDEVLNKSESLILPSSARRRSLLKAAKKLVSAVRARGELGFSVHEWNFKVLAEGHRQAFSGGRVTALDIPPFLWTKSLIAAVAKLYGGIKE
DGDLDGDDVSMKEIGYRRQSENEEIEVVGSKPGKAEKIVFLPPEDAVVGGQIVQKSRDHVKSVGNENNTRKPEKIGPVGLKEVNPSPLSVHQTGPSGHPSLSDLPFQPFK
GKMEGYPNPNTKAGKEKSKEVTPPNRRKYNGLKSYRIERERKDEKAYDSREIELERALGVGPSDRVLGEEGYQSNSSIISYSDDESFLSTPFVVEPGQVRFHNLFNEGEA
SDQNRAHGKVAGEGEEGHKEKYSVAEDVRTNEAAVNHAKQSTEFQQNSQSTEPISQSIIKAGGFSHPWAVTSPYSCVWPHSSNGVGGPLFPCAVSASPWVFGLSNGFVNS
GSLPNPFMVSPSSSLGDTLSQPVSVSWGAKDLPNSSNVGAIGCIVEGGSSPLPDRETGGESIMLGRDSCDKRARSLKFDEIIKGLQTPKEVSEEGSTSIGCLVSHVADDS
LAPIQERISFNLVEDEHLGVSCMNSGEELESCSTFQEHVCEEEKENELAVTEEVQEVEFEVDQPSSVLSSLSFVEYD