; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024633 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024633
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:17757666..17769694
RNA-Seq ExpressionSpg024633
SyntenySpg024633
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW16209.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]7.4e-3645.56Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  +K+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD  ++S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN

RVW91468.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.3e-3644.27Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  +K+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD  ++S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRARS---RIDR
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N +  +   R+DR
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRARS---RIDR

RVW93866.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.3e-3644.27Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  +K+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD  ++S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N +      R+DR
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR

XP_028075126.1 uncharacterized protein LOC114277426 [Camellia sinensis]1.3e-3746.52Show/hide
Query:  RGREKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFS--------LSG--AE
        R R KR+ VK++L  + PD+V+  ETK ++  R F++SVWG R  +WA + S G S GILIMWD  ++S  EV+ G FS+SI F         L+G    
Subjt:  RGREKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFS--------LSG--AE

Query:  SRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN---NRARSRIDR
        +R   R+++W+ELG LFGLC   WC+  DFNV R  SEK +     RSMR F+SFI  C+L DPPL N  +TW+N   NR   R+DR
Subjt:  SRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN---NRARSRIDR

XP_028093340.1 uncharacterized protein LOC114293463 [Camellia sinensis]7.4e-3647.49Show/hide
Query:  VKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFS--------LSGAESRSK--GRKE
        VKEVL  + PDIV+  ETK ++  R F++SVWG R  +WA + S G S GILIMWD  ++S  EV+ G FS+SI+F         L+G     K   R+E
Subjt:  VKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFS--------LSGAESRSK--GRKE

Query:  FWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN---NRARSRIDR
        +W+EL  LFGLC   WC+ GDFNV R  SEK +    +RSMR F+SFI  C+L D PL N  +TW+N   NR   ++DR
Subjt:  FWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN---NRARSRIDR

TrEMBL top hitse value%identityAlignment
A0A438BYX6 Transposon TX1 uncharacterized 149 kDa protein3.6e-3645.56Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  +K+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD  ++S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWAN

A0A438I435 Transposon TX1 uncharacterized 149 kDa protein1.6e-3644.27Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  +K+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD  ++S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRARS---RIDR
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N +  +   R+DR
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRARS---RIDR

A0A438IAX3 Transposon TX1 uncharacterized 149 kDa protein2.1e-3644.27Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  +K+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD  ++S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N +      R+DR
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR

A0A438IBZ1 LINE-1 retrotransposable element ORF2 protein6.1e-3644.79Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------
        N RG   R KR  VK+ L  ENPD+V++ ETK++   R FV SVW  R   W  + + GAS GILI+WD   +S +EV+ G+FS+S+ FSL G       
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSG-------

Query:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR
             +    RK+FW EL D++GL    WC+ GDFNV R  SEK     +T SMR F+SFI  C+L DPPL N ++TW+N +      R+DR
Subjt:  ---AESRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR

A5B9F0 Reverse transcriptase domain-containing protein4.7e-3642.71Show/hide
Query:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSGAE-----
        N+RG   R+KR  VK+ L  E PDIV++ ETK+ +  R FV S+W  R  +WA + + GAS GIL+MWD   +  +EV+ G+FS+S+ F++ G+E     
Subjt:  NSRG---REKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSGAE-----

Query:  -----SRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR
             + +  RK+FW EL D+FGL   CWC+ GDFNV R  SEK   G++T SM+  + FI   +L DPPL + ++TW+N +      R+DR
Subjt:  -----SRSKGRKEFWNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRAR---SRIDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCCGAATCTGGGTTCTACGTTCATGAATGAAGGGGCTGTCTCCGAGCAAAATCAGGTTGAGGCGAAGGCAGGACGGGTTTATTCTCAGTCTTTGGCGGTGGT
TGAGACTTTTTATCCGTTTGTCGTGGGTATGCAGCAGCCTAGCCCATCTGCTGAGGACCCTTCTTACTCGATGGTCGAGAGCATGATGCCAAATTTCCCCTATGCATCGT
TTGGCGCTCTTCCGAGAATGGGGGAGGGGAATCAAGTTGGGAATCCTTTTTCTTCTTGCTATCCAGTTTTTGTCAATCCTAGCGTTTTTCCTGGAGGTCCCTTTCCTCAC
CCTATGGCTTTCATGTCGGGAGAGTTTGGTCCGTCTTTAATTACGAGTCCTAATGCTTATAGAATCGGACTCGAAGGGAATGACCATCCTTGTGCAATGGGGCTAGTTAT
AGAGGATTCTGATTGTAAATCTCATTCCTCAAGTCATGTAAGGGTTCCATTTCAGGGGAGTGTTATAGGTCAATGGACCTCGGGATGGGCGGCGTTAGCTTCGGTTGGCA
TTCAGGCGACCCCGACAAAGGGAGGGCCTTTGAAATCCATCGATCCCCCAGATGCCCCAATGAAAGGAAATCAATTTCGTCAAAGGAAAGGGAAAGGGGGAACCAATAAG
ACAAATAGGGAACTTAAGAAATTGACGAACTCAAGGGGGAGGGAGAAGAGGAATTTTGTGAAGGAGGTGTTGTCCCAAGAAAACCCGGACATTGTGGTCCTTCTTGAGAC
AAAGCGGCAGAAGTACTGTAGAAGCTTCGTGAAGAGCGTTTGGGGTAGGAGAAAAGCGAAGTGGGCTGGTATTGAGTCCCTTGGGGCGTCGTGGGGTATTCTTATTATGT
GGGATGGGAGCCTGATTTCGATCAAGGAGGTAATCAAAGGAGCCTTCTCGATCTCTATTTCTTTTTCTCTCTCTGGAGCAGAGTCGAGGTCTAAAGGTAGAAAGGAGTTT
TGGAACGAGCTGGGTGACCTCTTTGGCCTTTGCGGGTCTTGCTGGTGCATTATGGGAGACTTCAATGTCACGAGGTTTCCCTCCGAGAAGGCTTCCAGGGGCAAGGTGAC
CAGATCCATGAGACAGTTTAATAGTTTCATTGAGGGGTGCGATCTTTTCGATCCTCCTTTAGTGAATGGGAACTACACTTGGGCTAACAACAGAGCAAGGTCGCGCATTG
ACAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCCGAATCTGGGTTCTACGTTCATGAATGAAGGGGCTGTCTCCGAGCAAAATCAGGTTGAGGCGAAGGCAGGACGGGTTTATTCTCAGTCTTTGGCGGTGGT
TGAGACTTTTTATCCGTTTGTCGTGGGTATGCAGCAGCCTAGCCCATCTGCTGAGGACCCTTCTTACTCGATGGTCGAGAGCATGATGCCAAATTTCCCCTATGCATCGT
TTGGCGCTCTTCCGAGAATGGGGGAGGGGAATCAAGTTGGGAATCCTTTTTCTTCTTGCTATCCAGTTTTTGTCAATCCTAGCGTTTTTCCTGGAGGTCCCTTTCCTCAC
CCTATGGCTTTCATGTCGGGAGAGTTTGGTCCGTCTTTAATTACGAGTCCTAATGCTTATAGAATCGGACTCGAAGGGAATGACCATCCTTGTGCAATGGGGCTAGTTAT
AGAGGATTCTGATTGTAAATCTCATTCCTCAAGTCATGTAAGGGTTCCATTTCAGGGGAGTGTTATAGGTCAATGGACCTCGGGATGGGCGGCGTTAGCTTCGGTTGGCA
TTCAGGCGACCCCGACAAAGGGAGGGCCTTTGAAATCCATCGATCCCCCAGATGCCCCAATGAAAGGAAATCAATTTCGTCAAAGGAAAGGGAAAGGGGGAACCAATAAG
ACAAATAGGGAACTTAAGAAATTGACGAACTCAAGGGGGAGGGAGAAGAGGAATTTTGTGAAGGAGGTGTTGTCCCAAGAAAACCCGGACATTGTGGTCCTTCTTGAGAC
AAAGCGGCAGAAGTACTGTAGAAGCTTCGTGAAGAGCGTTTGGGGTAGGAGAAAAGCGAAGTGGGCTGGTATTGAGTCCCTTGGGGCGTCGTGGGGTATTCTTATTATGT
GGGATGGGAGCCTGATTTCGATCAAGGAGGTAATCAAAGGAGCCTTCTCGATCTCTATTTCTTTTTCTCTCTCTGGAGCAGAGTCGAGGTCTAAAGGTAGAAAGGAGTTT
TGGAACGAGCTGGGTGACCTCTTTGGCCTTTGCGGGTCTTGCTGGTGCATTATGGGAGACTTCAATGTCACGAGGTTTCCCTCCGAGAAGGCTTCCAGGGGCAAGGTGAC
CAGATCCATGAGACAGTTTAATAGTTTCATTGAGGGGTGCGATCTTTTCGATCCTCCTTTAGTGAATGGGAACTACACTTGGGCTAACAACAGAGCAAGGTCGCGCATTG
ACAGATAG
Protein sequenceShow/hide protein sequence
MEAPNLGSTFMNEGAVSEQNQVEAKAGRVYSQSLAVVETFYPFVVGMQQPSPSAEDPSYSMVESMMPNFPYASFGALPRMGEGNQVGNPFSSCYPVFVNPSVFPGGPFPH
PMAFMSGEFGPSLITSPNAYRIGLEGNDHPCAMGLVIEDSDCKSHSSSHVRVPFQGSVIGQWTSGWAALASVGIQATPTKGGPLKSIDPPDAPMKGNQFRQRKGKGGTNK
TNRELKKLTNSRGREKRNFVKEVLSQENPDIVVLLETKRQKYCRSFVKSVWGRRKAKWAGIESLGASWGILIMWDGSLISIKEVIKGAFSISISFSLSGAESRSKGRKEF
WNELGDLFGLCGSCWCIMGDFNVTRFPSEKASRGKVTRSMRQFNSFIEGCDLFDPPLVNGNYTWANNRARSRIDR