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Spg024656 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024656
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold12:20148547..20153728
RNA-Seq ExpressionSpg024656
SyntenySpg024656
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]4.1e-1131.45Show/hide
Query:  VVEEFQAIEFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWM
        +V+EF A  FK ++       + VRG  I F+S  IN+ + L+D+  V+ +A      D +    VL  +     +W+G   +R ++  + L   A  W 
Subjt:  VVEEFQAIEFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWM

Query:  HWVKNHIMPTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
        H++KN +MPT+H+ T+SL R++L++ I+   PID+G I+V+ +     K   A+  P L
Subjt:  HWVKNHIMPTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

KAE8718449.1 hypothetical protein F3Y22_tig00110013pilonHSYRG00240 [Hibiscus syriacus]5.3e-1131.21Show/hide
Query:  VLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWMHWVKNHIMPTTHDATLSLQRV
        + VRG  I F+S  IN  + L+++  V+G+A+     D +    VL  +     +W+G   +R ++  + L   A  W H++K+ +MPT+H+ T+SL R+
Subjt:  VLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWMHWVKNHIMPTTHDATLSLQRV

Query:  ILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFA
        +L++ +I   PID+G+I+V+ +     K   A+  P L  A
Subjt:  ILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFA

PON50458.1 hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii]5.3e-1131.13Show/hide
Query:  EFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIM
        EF  +    + D V VRG  +  S+  IN +Y L D+ + E +  +  + +  L++VL  VA   A+W+    GV   ++S  L+  A  W H++K+ ++
Subjt:  EFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIM

Query:  PTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
        PTTH   +S +RV+L+Y ++ G  I++G+++   +   A +  GA+F P L
Subjt:  PTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]1.8e-1133.1Show/hide
Query:  ETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIMPTTHDATLS
        + D V VRG  +  S+  IN +Y L D  + E +  +  + +  L+ VL  VA   A+W+    G    ++S  L+  A  W H++K+ ++PTTH  T+S
Subjt:  ETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIMPTTHDATLS

Query:  LQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
         +RV+L+Y ++ G  I++GQI+   +   A +  GA+F P L
Subjt:  LQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]4.8e-1228.86Show/hide
Query:  EFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWDGHGVARTIKSQLLDFEATYWMHWVKNHIMPT
        EF     + +  E+ VR   +++S   IN++ EL      + + L     D+ L ++L  VA     W   G AR +K+Q L  EA  W +++++ I P 
Subjt:  EFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWDGHGVARTIKSQLLDFEATYWMHWVKNHIMPT

Query:  THDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
        +HD  L L+RV+++YCI++  P D+G+++   ++    +  G +  P L
Subjt:  THDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

TrEMBL top hitse value%identityAlignment
A0A2P5BNT0 Uncharacterized protein (Fragment)2.6e-1131.13Show/hide
Query:  EFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIM
        EF  +    + D V VRG  +  S+  IN +Y L D+ + E +  +  + +  L++VL  VA   A+W+    GV   ++S  L+  A  W H++K+ ++
Subjt:  EFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIM

Query:  PTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
        PTTH   +S +RV+L+Y ++ G  I++G+++   +   A +  GA+F P L
Subjt:  PTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

A0A2P5CPE8 Uncharacterized protein8.8e-1233.1Show/hide
Query:  ETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIMPTTHDATLS
        + D V VRG  +  S+  IN +Y L D  + E +  +  + +  L+ VL  VA   A+W+    G    ++S  L+  A  W H++K+ ++PTTH  T+S
Subjt:  ETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWD--GHGVARTIKSQLLDFEATYWMHWVKNHIMPTTHDATLS

Query:  LQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
         +RV+L+Y ++ G  I++GQI+   +   A +  GA+F P L
Subjt:  LQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

A0A6A2WM54 Uncharacterized protein2.0e-1131.45Show/hide
Query:  VVEEFQAIEFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWM
        +V+EF A  FK ++       + VRG  I F+S  IN+ + L+D+  V+ +A      D +    VL  +     +W+G   +R ++  + L   A  W 
Subjt:  VVEEFQAIEFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWM

Query:  HWVKNHIMPTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL
        H++KN +MPT+H+ T+SL R++L++ I+   PID+G I+V+ +     K   A+  P L
Subjt:  HWVKNHIMPTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGL

A0A6A3ASF6 Uncharacterized protein7.5e-1131.21Show/hide
Query:  VLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWMHWVKNHIMPTTHDATLSLQRV
        + VRG  I F+S  IN  + L+++  V+G+A+L    D +    VL  +     +W+G   +R ++  + L   A  W H++K+ +MPT+H+  +SL R+
Subjt:  VLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWMHWVKNHIMPTTHDATLSLQRV

Query:  ILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFA
        +L++ +I   PID+G+I+V+ +     K   A+  P L  A
Subjt:  ILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFA

A0A6A3BU96 Uncharacterized protein2.6e-1131.21Show/hide
Query:  VLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWMHWVKNHIMPTTHDATLSLQRV
        + VRG  I F+S  IN  + L+++  V+G+A+     D +    VL  +     +W+G   +R ++  + L   A  W H++K+ +MPT+H+ T+SL R+
Subjt:  VLVRGHSIAFSSACINNVYELRDIRNVEGNALL-NCLDDDFLSVVLLAVARPEAKWDGHGVAR-TIKSQLLDFEATYWMHWVKNHIMPTTHDATLSLQRV

Query:  ILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFA
        +L++ +I   PID+G+I+V+ +     K   A+  P L  A
Subjt:  ILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGAGTGAAGTGCAACCCGCTTCCATAGAAGAAAAATCTTCCTTAGAGAGCTTGCTTGAAGATTTTATTGAGGAGTCTAGAGCCATGAATTTAGAATTAGAAAA
ATCTATGGAGAGATTCCAGACCCAAAGGGAAGATAGGGAAGTAGGATGCACTTCCATAGAGTGTCTAGTGAGTCATGTGGCCAGTGATTCATTAGCGCCCATTCAAGAGC
CTAATTCTTTCGATTTCGCTAGAGACGAGCACATAGGGGTGAGTTGTATAGATTATGAGGAAGAATTGGATAGTTCTAGCACCCATCAAGAACAAGTTTGTGAGGAAGAA
AAAGAAAATGAGCCCATAGTGGTTGAGGAGTTTCAAGCGATAGAGTTTAAGTTAAGCAAGATTATTCGCGAAACGGATGAAGTACTGGTTCGGGGCCATTCAATCGCATT
CTCCTCCGCCTGTATCAACAACGTCTACGAGTTGCGTGACATCCGAAACGTAGAAGGGAATGCGCTCCTCAACTGCCTTGACGACGATTTCCTGAGCGTCGTCCTTCTTG
CGGTAGCCAGACCTGAGGCCAAATGGGATGGGCACGGAGTTGCGAGGACCATCAAATCGCAACTGCTAGACTTTGAGGCAACCTACTGGATGCATTGGGTGAAGAATCAC
ATCATGCCCACAACGCATGATGCGACGTTGAGCCTCCAACGGGTGATCCTAGTTTATTGCATTATAAAGGGCACCCCAATCGACTTGGGACAGATCCTCGTCGAAGCATT
GCGAAAGACCGCCACAAAACCGAAGGGTGCAATGTTTTGCCCAGGCCTTGCGTTTGCAGCAAGAACGAATGTGCCTGTTGGTCGCTACCGCAAGCGCACGGGTGCCTTTT
ATAGGCTCGAATTGGAGGTAGCGTCGCGACGCTATATTGCACAGCGTCGCGACGCTGCTATGCACGCGTCGTGTTGCCCAAGAAATGGACAGCGTCTCGACGCTGTGCCA
TTTTACAGCAATTCCAGCTTCGGTTTGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGAGTGAAGTGCAACCCGCTTCCATAGAAGAAAAATCTTCCTTAGAGAGCTTGCTTGAAGATTTTATTGAGGAGTCTAGAGCCATGAATTTAGAATTAGAAAA
ATCTATGGAGAGATTCCAGACCCAAAGGGAAGATAGGGAAGTAGGATGCACTTCCATAGAGTGTCTAGTGAGTCATGTGGCCAGTGATTCATTAGCGCCCATTCAAGAGC
CTAATTCTTTCGATTTCGCTAGAGACGAGCACATAGGGGTGAGTTGTATAGATTATGAGGAAGAATTGGATAGTTCTAGCACCCATCAAGAACAAGTTTGTGAGGAAGAA
AAAGAAAATGAGCCCATAGTGGTTGAGGAGTTTCAAGCGATAGAGTTTAAGTTAAGCAAGATTATTCGCGAAACGGATGAAGTACTGGTTCGGGGCCATTCAATCGCATT
CTCCTCCGCCTGTATCAACAACGTCTACGAGTTGCGTGACATCCGAAACGTAGAAGGGAATGCGCTCCTCAACTGCCTTGACGACGATTTCCTGAGCGTCGTCCTTCTTG
CGGTAGCCAGACCTGAGGCCAAATGGGATGGGCACGGAGTTGCGAGGACCATCAAATCGCAACTGCTAGACTTTGAGGCAACCTACTGGATGCATTGGGTGAAGAATCAC
ATCATGCCCACAACGCATGATGCGACGTTGAGCCTCCAACGGGTGATCCTAGTTTATTGCATTATAAAGGGCACCCCAATCGACTTGGGACAGATCCTCGTCGAAGCATT
GCGAAAGACCGCCACAAAACCGAAGGGTGCAATGTTTTGCCCAGGCCTTGCGTTTGCAGCAAGAACGAATGTGCCTGTTGGTCGCTACCGCAAGCGCACGGGTGCCTTTT
ATAGGCTCGAATTGGAGGTAGCGTCGCGACGCTATATTGCACAGCGTCGCGACGCTGCTATGCACGCGTCGTGTTGCCCAAGAAATGGACAGCGTCTCGACGCTGTGCCA
TTTTACAGCAATTCCAGCTTCGGTTTGGGCTAA
Protein sequenceShow/hide protein sequence
MEESEVQPASIEEKSSLESLLEDFIEESRAMNLELEKSMERFQTQREDREVGCTSIECLVSHVASDSLAPIQEPNSFDFARDEHIGVSCIDYEEELDSSSTHQEQVCEEE
KENEPIVVEEFQAIEFKLSKIIRETDEVLVRGHSIAFSSACINNVYELRDIRNVEGNALLNCLDDDFLSVVLLAVARPEAKWDGHGVARTIKSQLLDFEATYWMHWVKNH
IMPTTHDATLSLQRVILVYCIIKGTPIDLGQILVEALRKTATKPKGAMFCPGLAFAARTNVPVGRYRKRTGAFYRLELEVASRRYIAQRRDAAMHASCCPRNGQRLDAVP
FYSNSSFGLG