| GenBank top hits | e value | %identity | Alignment |
|---|
| AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria] | 5.1e-156 | 82.77 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
TNEIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTASPWVFEPEY GKSRIFDGRTGNPFEQPVIIGKPYILKLIH ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| KAD4981692.1 hypothetical protein E3N88_18363 [Mikania micrantha] | 2.1e-170 | 79.71 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITLGKGGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRA SK WLGKRPVVRGVVMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI-----------------------------------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVR
GEGRAPI EFI GQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEW+R
Subjt: GEGRAPI-----------------------------------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVR
Query: EGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVK
EGRVPLQTIRAKIDYC Y VRTIYG ALEPAWITS+QI+AGRRAMTRNAR G KIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVK
Subjt: EGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVK
Query: P-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIA
P DNSGAREL CIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR+N MIIRYDDNAAVVIDQEGNPKGTR+FGAIA
Subjt: P-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIA
Query: RELRQLNFT
RELRQ NFT
Subjt: RELRQLNFT
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| KAD4981935.1 hypothetical protein E3N88_18606 [Mikania micrantha] | 2.3e-164 | 73.74 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITL KGGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRA SK WLGKRPVVRGVVMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI----------------------------------------------------------------------EFIVGQLKNRVSFRKAMKKAIEL
GEGRAPI EFI GQLKNRVSFRKAMKKAIEL
Subjt: GEGRAPI----------------------------------------------------------------------EFIVGQLKNRVSFRKAMKKAIEL
Query: TEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIF
TEQA TKGIQVQIAGRIDGKEIARVEW+REGRVPLQTIRAKIDYC Y VRTIYG ALEPAWITS+QI+AGRRAMT NAR G KIWVRIF
Subjt: TEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIF
Query: PDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENA
PDKPVT+RP ETRMGSGKG PEYWVAVVKP DNSGAREL CIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR+N
Subjt: PDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENA
Query: MIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
MIIRYDDNAAVVIDQEGNPKGTR+FGAIARELRQ NFT
Subjt: MIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
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| KAD7117051.1 hypothetical protein E3N88_04319 [Mikania micrantha] | 7.3e-171 | 83.64 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITLGKGGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GV+QKSLGRA SK WLGKRPVVRG+VMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI-----------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIY
GEGRAPI +FI GQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRID KEIARVEW+REGRVPLQTIRAKIDYC Y VRTIY
Subjt: GEGRAPI-----------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIY
Query: GVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGA
G ALEPAWITS+QI+AGRRAMTRNAR G KIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKP DNSGAREL CIRIIGA
Subjt: GVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGA
Query: SNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
SNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR+N MIIRYDDN AVVIDQEGNPKGTR FGAIARELRQ NFT
Subjt: SNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
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| YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis] | 5.1e-156 | 82.77 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
TNEIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTASPWVFEPEY GKSRIFDGRTGNPFEQPVIIGKPYILKLIH ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1P8LDX8 DNA-directed RNA polymerase subunit beta | 2.4e-156 | 82.77 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
TNEIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTASPWVFEPEY GKSRIFDGRTGNPFEQPVIIGKPYILKLIH ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| A0A2Z2CGF9 DNA-directed RNA polymerase subunit beta | 2.4e-156 | 82.77 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
TNEIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTASPWVFEPEY GKSRIFDGRTGNPFEQPVIIGKPYILKLIH ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| A0A5N6NML1 S1-like domain-containing protein | 1.1e-164 | 73.74 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITL KGGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRA SK WLGKRPVVRGVVMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI----------------------------------------------------------------------EFIVGQLKNRVSFRKAMKKAIEL
GEGRAPI EFI GQLKNRVSFRKAMKKAIEL
Subjt: GEGRAPI----------------------------------------------------------------------EFIVGQLKNRVSFRKAMKKAIEL
Query: TEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIF
TEQA TKGIQVQIAGRIDGKEIARVEW+REGRVPLQTIRAKIDYC Y VRTIYG ALEPAWITS+QI+AGRRAMT NAR G KIWVRIF
Subjt: TEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIF
Query: PDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENA
PDKPVT+RP ETRMGSGKG PEYWVAVVKP DNSGAREL CIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR+N
Subjt: PDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENA
Query: MIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
MIIRYDDNAAVVIDQEGNPKGTR+FGAIARELRQ NFT
Subjt: MIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
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| A0A5N6NN09 Ribosomal_L2_C domain-containing protein | 1.0e-170 | 79.71 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITLGKGGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRA SK WLGKRPVVRGVVMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI-----------------------------------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVR
GEGRAPI EFI GQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEW+R
Subjt: GEGRAPI-----------------------------------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVR
Query: EGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVK
EGRVPLQTIRAKIDYC Y VRTIYG ALEPAWITS+QI+AGRRAMTRNAR G KIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVK
Subjt: EGRVPLQTIRAKIDYCCYPVRTIYGVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVK
Query: P-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIA
P DNSGAREL CIRIIGASNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR+N MIIRYDDNAAVVIDQEGNPKGTR+FGAIA
Subjt: P-------DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIA
Query: RELRQLNFT
RELRQ NFT
Subjt: RELRQLNFT
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| A0A5N6PW93 Ribosomal_L2_C domain-containing protein | 3.5e-171 | 83.64 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITLGKGGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GV+QKSLGRA SK WLGKRPVVRG+VMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI-----------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIY
GEGRAPI +FI GQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRID KEIARVEW+REGRVPLQTIRAKIDYC Y VRTIY
Subjt: GEGRAPI-----------------EFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIY
Query: GVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGA
G ALEPAWITS+QI+AGRRAMTRNAR G KIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKP DNSGAREL CIRIIGA
Subjt: GVYGSSHKRYTIQALEPAWITSKQIKAGRRAMTRNARGGEKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKP-------DNSGARELTCIRIIGA
Query: SNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
SNRRYAHIGDVIVAVIK AVPN PLERSEV+RAVIVRTCKELKR+N MIIRYDDN AVVIDQEGNPKGTR FGAIARELRQ NFT
Subjt: SNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFT
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| SwissProt top hits | e value | %identity | Alignment |
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| A4QK10 DNA-directed RNA polymerase subunit beta | 4.9e-154 | 79.94 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
T EIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTA+PWVFEPEY GKSRIFDGRTG+PFEQPVIIGKPYILKLIH ALVTQQPLRGR+KQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| A4QK97 DNA-directed RNA polymerase subunit beta | 4.9e-154 | 79.94 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
T EIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTA+PWVFEPEY GKSRIFDGRTG+PFEQPVIIGKPYILKLIH ALVTQQPLRGR+KQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| A4QL11 DNA-directed RNA polymerase subunit beta | 1.7e-154 | 80.23 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
T EIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTA+PWVFEPEY GKSRIFDGRTG+PFEQPVIIGKPYILKLIH ALVTQQPLRGR+KQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| P50546 DNA-directed RNA polymerase subunit beta | 4.9e-154 | 79.94 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
T EIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTA+PWVFEPEY GKSRIFDGRTG+PFEQPVIIGKPYILKLIH ALVTQQPLRGR+KQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| Q4VZP1 DNA-directed RNA polymerase subunit beta | 5.6e-158 | 82.49 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
TNEIPHLE RLL NLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTASPWVFEPEY GKSRIFDGRTGNPFEQPVIIGKPYILKLIH ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| Arabidopsis top hits | e value | %identity | Alignment |
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| ATCG00190.1 RNA polymerase subunit beta | 3.5e-155 | 79.94 | Show/hide |
Query: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
T EIPHLE RLLRNLDKNGIVMLGSWVETGDILVGKLTPQ+AKESSYAPEDRLLRAILGI
Subjt: TNEIPHLEVRLLRNLDKNGIVMLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGI----------------------------------------
Query: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
QKREIKVGDKVAGRHGNKGI+SKILPR+DMPYLQ+GRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELY
Subjt: ----QKREIKVGDKVAGRHGNKGIVSKILPREDMPYLQNGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELY
Query: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
EASKQTA+PWVFEPEY GKSRIFDGRTG+PFEQPVIIGKPYILKLIH ALVTQQPLRGR+KQGGQRVGEMEVWALEGFGVAHILQEM
Subjt: EASKQTASPWVFEPEYSGKSRIFDGRTGNPFEQPVIIGKPYILKLIH--------------ALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEM
Query: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
LTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELRSLALELNHFL S
Subjt: LTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLES
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| ATCG00780.1 ribosomal protein L14 | 1.2e-46 | 92.08 | Show/hide |
Query: DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNF
DNSGAREL CIRIIGASNRRYAHIGDVIVAVIK+A+PNTPLERSEVIRAVIVRTCKELKR N IIRYDDNAAVVIDQEGNPKGTR+FGAI RELRQLNF
Subjt: DNSGARELTCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENAMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNF
Query: T
T
Subjt: T
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| ATCG00800.1 structural constituent of ribosome | 9.5e-36 | 75.76 | Show/hide |
Query: VVMNPVDHPHGGGEGRAPIEFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIYGVYG
+ + + +P+ G+ EFI GQLKNRVSFRKAMKKAIELTEQA TKGIQVQIAGRIDGKEIARVEW+REGRVPLQTI AKIDYC Y VRTIYGV G
Subjt: VVMNPVDHPHGGGEGRAPIEFIVGQLKNRVSFRKAMKKAIELTEQAGTKGIQVQIAGRIDGKEIARVEWVREGRVPLQTIRAKIDYCCYPVRTIYGVYG
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| ATCG00830.1 ribosomal protein L2 | 2.5e-52 | 96.26 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITLG+GGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRA SKCWLGKRPVVRGVVMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI
GEGRAPI
Subjt: GEGRAPI
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| ATCG01310.1 ribosomal protein L2 | 2.5e-52 | 96.26 | Show/hide |
Query: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
MPLGTAIHNIEITLG+GGQLARAA AVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRA SKCWLGKRPVVRGVVMNPVDHPHGG
Subjt: MPLGTAIHNIEITLGKGGQLARAAVAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAESKCWLGKRPVVRGVVMNPVDHPHGG
Query: GEGRAPI
GEGRAPI
Subjt: GEGRAPI
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