CuGenDBv2

Gene ID	Spg024690
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein Ycf2
Genome location	scaffold12:11295192..11297772
RNA-Seq Expression	Spg024690
Synteny	Spg024690
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

3.7e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

YP_009751528.1 Ycf2 protein [Thladiantha dubia]

3.7e-49

96.15

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Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

YP_009751696.1 Ycf2 protein [Hodgsonia heteroclita]

3.7e-49

96.15

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Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

3.7e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

3.7e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

1.8e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

A0A6H0ESM3 Protein Ycf2

1.8e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

A0A6H0ET42 Protein Ycf2

1.8e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

A0A6H0EV63 Protein Ycf2

1.8e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

A0A6M3RUH1 Protein Ycf2

1.8e-49

96.15

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSR DNDRVTLLLRPEP NPLDMIQNGSCSIVDQ FLYEQYESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

SwissProt top hits

e value

%identity

Alignment

A0A379 Protein Ycf2

5.1e-49

89.42

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+ DNDRVTLLLRPEP NPLDM+Q+GSCSI+DQ FLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

A7Y3J6 Protein Ycf2

7.8e-50

91.26

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEK+CS+ DNDRVTLLLRPEP NPLDM+QNGSCSI+DQIFLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEG
        EEG
Subjt:  EEG

Q09MB4 Protein Ycf2

1.1e-48

90.38

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSV QDLWSLPGPDEKNGITS GLVENDSDLVHGLLEVEGAL+GSSRTEKDCSR DNDRVTLLLRPEP NPLDM+Q GSCSIVDQ FLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

Q0ZIV6 Protein Ycf2

6.0e-50

92.23

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSV QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+ DNDRVTLLLRPEP NPLDM+QNGSCSIVDQ FLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEG
        EEG
Subjt:  EEG

Q9B1K6 Protein Ycf2

2.3e-49

90.38

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAG+V QDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+ DNDRVTLLLRPEP NPL+MIQNGSCSIVDQ FLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.0e-44

82.69

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+ DNDRVTLL R EP +PL M+Q+GSCSIVDQ FLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.0e-44

82.69

Show/hide

Query:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF
        SCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCS+ DNDRVTLL R EP +PL M+Q+GSCSIVDQ FLYE+YESEF
Subjt:  SCSAGSVVQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEF

Query:  EEGK
        EEG+
Subjt:  EEGK

Sequences

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CDS sequence

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ATGATCTCCAGAAACCTTTTGCTTGAGCATTTCTTCTCGCCTGGTCTGTTGCTGCAGCAAGGAAAAATTCTGGAGCTAGGCTGTGGTGAGTCCTTAGAATTAAGTTGGAA
AGTGGTGATTATTTGTCCATGCCGGAGGAATCATTTTGCTGCAGCAGAGCTTGGTGTTGTAGAGTGCTCAGAATCTGTTGCTGGGCGACTGGAAGGAGCAAATTCTGTGC
TGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGGACCGGATGAAAAAAATGGGATCACT
TCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATCTGATAA
TGATCGAGTGACATTGCTTCTTAGGCCCGAACCCATGAATCCCTTAGATATGATACAAAATGGATCTTGTTCTATCGTTGATCAGATATTTCTCTATGAACAATACGAAT
CAGAGTTTGAAGAAGGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAG

mRNA sequence

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Protein sequence

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MISRNLLLEHFFSPGLLLQQGKILELGCGESLELSWKVVIICPCRRNHFAAAELGVVECSESVAGRLEGANSVLQQNWEQKLPRHSSCSAGSVVQDLWSLPGPDEKNGIT
SYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRSDNDRVTLLLRPEPMNPLDMIQNGSCSIVDQIFLYEQYESEFEEGKEKESSTRNR

Spg024690 (gene) of Sponge gourd (cylindrica) v1 genome