CuGenDBv2

Gene ID	Spg024692
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	NERD domain-containing protein
Genome location	scaffold12:15310023..15321838
RNA-Seq Expression	Spg024692
Synteny	Spg024692
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605718.1 hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia]

8.3e-35

58.33

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNN VLGEFLEFKGKKEDMQALR+IKRSKVSCIV+QKMR + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RLRVLYSTR+++NEG SASEWKEIT+G +TMVVFQMEYSSKVRKIKISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

XP_022157167.1 uncharacterized protein LOC111023945 [Momordica charantia]

2.2e-35

57.05

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNNF+LGEF+EFKGKKEDMQALRDIKRSKVSCIV+Q+MRM+ F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        R RVLYS RD+RN+GASASEWKE+TVG ST+VVFQMEYSSKVRKIKIS+I SLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

XP_022957721.1 uncharacterized protein LOC111459180 [Cucurbita moschata]

4.9e-35

58.33

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNN VLGEFLEFKGKKEDMQALR+IKRSKVSCIV+QKMR + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RLRVLYSTR+++NEG SASEWKEIT+G +TMVVFQMEYSSKVRKIKISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

XP_022995191.1 uncharacterized protein LOC111490811 [Cucurbita maxima]

4.9e-35

58.33

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNN VLGEFLEFKGKKEDMQALR+IKRSKVSCIV+QKMR + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RLRVLYSTR+++NEG SASEWKEIT+G +TMVVFQMEYSSKVRKIKISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

XP_023534697.1 uncharacterized protein LOC111796185 [Cucurbita pepo subsp. pepo]

1.4e-34

57.69

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNN VLGEFLEFKGKKEDMQ LR+IKRSKVSCIV+QKMR + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RLRVLYSTR+++NEG SASEWKEIT+G +TMVVFQMEYSSKVRKIKISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG9 NERD domain-containing protein

5.8e-34

56.41

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++EL GNN VLGEFLEFK KKEDMQALR+I+RSKVSCI++QK+R + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        R RVLYSTRD+RNEGASASEWKE+TVG STMVVFQMEYSSKVRK+KISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

A0A6J1DTU9 uncharacterized protein LOC111023945

1.1e-35

57.05

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNNF+LGEF+EFKGKKEDMQALRDIKRSKVSCIV+Q+MRM+ F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        R RVLYS RD+RN+GASASEWKE+TVG ST+VVFQMEYSSKVRKIKIS+I SLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

A0A6J1H014 uncharacterized protein LOC111459180

2.4e-35

58.33

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNN VLGEFLEFKGKKEDMQALR+IKRSKVSCIV+QKMR + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RLRVLYSTR+++NEG SASEWKEIT+G +TMVVFQMEYSSKVRKIKISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

A0A6J1K1B0 uncharacterized protein LOC111490811

2.4e-35

58.33

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGNN VLGEFLEFKGKKEDMQALR+IKRSKVSCIV+QKMR + F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RLRVLYSTR+++NEG SASEWKEIT+G +TMVVFQMEYSSKVRKIKISSIVSLSLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

A0A6J5U865 NERD domain-containing protein

3.8e-25

47.44

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELKGN +VLGEFLEFKGK+ED++ALR+IKRSK+S +VVQK  M+ F                                                 PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RL+VLYS RD+R+EGAS SEWKE+TV  ST V+FQ E S K+RK K+SSIVS+SLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

7.3e-21

40.38

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Query:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS
        +++ELK +  VLGEFLEFKGK+ED  ALR+IKRSKV  + +QK  M                                                    PS
Subjt:  NQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKKHDCIKLYNPFPSFSFPS

Query:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS
        RL+VLYS RD+R+EG+S +E KE+TV  ST V+FQ   S+K++K K+SS+VS+SLS
Subjt:  RLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLS

Sequences

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CDS sequence

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ATGCAATCGCCATTGCCGTCGTCATTGGTCTTCGCTGCCACTGCCGCTGTCGTCGTTAGCCTCTTCCTGCCGATAGCCTTGAATCAGATGGAGCTGAAAGGAAATAACTT
TGTTCTGGGAGAATTCCTGGAGTTCAAAGGGAAAAAGGAAGATATGCAGGCTTTGAGAGATATAAAAAGATCAAAAGTTAGCTGCATAGTCGTCCAGAAGATGAGAATGG
TCGCATTTGAATACCGGTCATGTGGTCGAGGGGATTGCTTGTTACCATCAGTCGAAAATTGGGGCAGAGAACTTGCACAAAGGCTCGACCATGTGATAGCTGGGAAAAAA
CATGACTGCATCAAGCTTTATAATCCATTTCCTTCATTTTCTTTTCCTTCAAGACTTCGAGTTTTATACTCTACTCGGGATTTTCGGAACGAGGGGGCCTCTGCTTCTGA
ATGGAAGGAAATAACAGTGGGATGTAGTACAATGGTAGTATTTCAGATGGAATATTCTTCTAAAGTTCGAAAAATCAAGATCTCTTCTATTGTATCTCTATCACTAAGTG
TCTGA

mRNA sequence

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Protein sequence

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MQSPLPSSLVFAATAAVVVSLFLPIALNQMELKGNNFVLGEFLEFKGKKEDMQALRDIKRSKVSCIVVQKMRMVAFEYRSCGRGDCLLPSVENWGRELAQRLDHVIAGKK
HDCIKLYNPFPSFSFPSRLRVLYSTRDFRNEGASASEWKEITVGCSTMVVFQMEYSSKVRKIKISSIVSLSLSV

Spg024692 (gene) of Sponge gourd (cylindrica) v1 genome