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Spg024696 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024696
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold12:13831761..13835217
RNA-Seq ExpressionSpg024696
SyntenySpg024696
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-1559.77Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF
        VEIELPVPDTLPTSAES  S+SSTW+ELY ESV     C    QG    H+ L          DDVCWLHA+FR K AG  GGGVTF
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-1566.22Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP
        VEIELPVPDTLPTSAESS S+SSTW+ELY+E V   MF       + EDDVCWLHA+FR K AG  GGGV   P
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.9e-1539.86Show/hide
Query:  GHFWTNWLGISFSFLQ-----------------------------------------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESV----
        G FWTNWL ISFSFLQ                                               VEIELPVPDTLPTSAES  S+SSTW+ELY E V    
Subjt:  GHFWTNWLGISFSFLQ-----------------------------------------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESV----

Query:  -----------CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVT
                     +  +G    +  DDVCWLH +FR K+AG  GGGVT
Subjt:  -----------CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-1559.77Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF
        VEIELPVPDTLPTSAES  S+SSTW+ELY ESV     C    QG    H+ L          DDVCWLHA+FR K AG  GGGVTF
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-1566.22Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP
        VEIELPVPDTLPTSAESS S+SSTW+ELY+E V   MF       + EDDVCWLHA+FR K AG  GGGV   P
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.1e-1559.77Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF
        VEIELPVPDTLPTSAES  S+SSTW+ELY ESV     C    QG    H+ L          DDVCWLHA+FR K AG  GGGVTF
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF

A0A5A7VIY9 Uncharacterized protein1.9e-1539.86Show/hide
Query:  GHFWTNWLGISFSFLQ-----------------------------------------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESV----
        G FWTNWL ISFSFLQ                                               VEIELPVPDTLPTSAES  S+SSTW+ELY E V    
Subjt:  GHFWTNWLGISFSFLQ-----------------------------------------------VEIELPVPDTLPTSAESSSSSSSTWVELYIESV----

Query:  -----------CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVT
                     +  +G    +  DDVCWLH +FR K+AG  GGGVT
Subjt:  -----------CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVT

A0A5A7VMG9 Reverse transcriptase1.9e-1566.22Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP
        VEIELPVPDTLPTSAESS S+SSTW+ELY+E V   MF       + EDDVCWLHA+FR K AG  GGGV   P
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP

A0A5D3D150 Reverse transcriptase1.1e-1559.77Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF
        VEIELPVPDTLPTSAES  S+SSTW+ELY ESV     C    QG    H+ L          DDVCWLHA+FR K AG  GGGVTF
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-----CSMFQQGQ---HMSL--------EEDDVCWLHAIFRTKLAGSSGGGVTF

A0A5D3DX39 Reverse transcriptase1.9e-1566.22Show/hide
Query:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP
        VEIELPVPDTLPTSAESS S+SSTW+ELY+E V   MF       + EDDVCWLHA+FR K AG  GGGV   P
Subjt:  VEIELPVPDTLPTSAESSSSSSSTWVELYIESV-CSMFQQGQHMSLEEDDVCWLHAIFRTKLAGSSGGGVTFTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTCTAAGGCTGGAGGAAGAACTAAGAGAGCACCGAACTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTGTCGAGCATTCTGGGGTGTAGAGGATGA
ATTAGAAGCTCAATTTGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTG
AAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTGTTCAATGTTTCAGCAGGGTCAACATATGTCGTTAGAGGAGGACGATGTCTGTTGG
CTTCACGCCATCTTCCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACATTCACACCTAGACATCATCCATGCTTGGCCACGAGGCGCCCTAGAAGCGTCCCCCT
ACAGATGGTGTTTGCATGGGTCAATAACAAGGTGAATGAGGAAAGTGTTCATAGTAAGTGGGTGAAGGAAACGTGTCAACGTATCCTACGGTCTCTTCCATTAGGTTGCA
CCGTGAGATTCCCATGTGCTGCCTACGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCACATGGGATTCAAAACAATGCAAACTTTAGAAATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGTCTAAGGCTGGAGGAAGAACTAAGAGAGCACCGAACTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTGTCGAGCATTCTGGGGTGTAGAGGATGA
ATTAGAAGCTCAATTTGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACATCTGCTG
AAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTGTTCAATGTTTCAGCAGGGTCAACATATGTCGTTAGAGGAGGACGATGTCTGTTGG
CTTCACGCCATCTTCCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGTGTGACATTCACACCTAGACATCATCCATGCTTGGCCACGAGGCGCCCTAGAAGCGTCCCCCT
ACAGATGGTGTTTGCATGGGTCAATAACAAGGTGAATGAGGAAAGTGTTCATAGTAAGTGGGTGAAGGAAACGTGTCAACGTATCCTACGGTCTCTTCCATTAGGTTGCA
CCGTGAGATTCCCATGTGCTGCCTACGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCACATGGGATTCAAAACAATGCAAACTTTAGAAATGGATAG
Protein sequenceShow/hide protein sequence
MLSKAGGRTKRAPNFRANQEDLWFSLVCRAFWGVEDELEAQFGHFWTNWLGISFSFLQVEIELPVPDTLPTSAESSSSSSSTWVELYIESVCSMFQQGQHMSLEEDDVCW
LHAIFRTKLAGSSGGGVTFTPRHHPCLATRRPRSVPLQMVFAWVNNKVNEESVHSKWVKETCQRILRSLPLGCTVRFPCAAYESPWERSPYGGLAHGIQNNANFRNG