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Spg024709 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024709
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionnovel plant SNARE 13
Genome locationscaffold12:13626844..13630631
RNA-Seq ExpressionSpg024709
SyntenySpg024709
Gene Ontology termsGO:0006810 - transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02988.1 MuDR family transposase isoform 1 [Cucumis melo var. makuwa]3.5e-2972.07Show/hide
Query:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSH
        RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQEL NVGKK MDD+DP I+ SKMVVEQTIE+GRQSAFTLEGQ      I +I      F +N  
Subjt:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSH

Query:  GSCSLIRETGY
        GS S I    Y
Subjt:  GSCSLIRETGY

XP_004138593.1 uncharacterized protein LOC101203713 isoform X1 [Cucumis sativus]4.3e-2788.31Show/hide
Query:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        YTNTPANKRVELFDERGINES+TDDNVQMT SI SQEL NVGKK MDD+DP IE SKMVVEQTIE+GRQSAFTLEGQ
Subjt:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

XP_008458283.1 PREDICTED: uncharacterized protein LOC103497748 isoform X1 [Cucumis melo]1.0e-2871.82Show/hide
Query:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSHG
        YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQEL NVGKK MDD+DP I+ SKMVVEQTIE+GRQSAFTLEGQ      I +I      F +N  G
Subjt:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSHG

Query:  SCSLIRETGY
        S S I    Y
Subjt:  SCSLIRETGY

XP_008458284.1 PREDICTED: uncharacterized protein LOC103497748 isoform X2 [Cucumis melo]7.8e-2976.77Show/hide
Query:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQIFSIAFDENSHGSCSLIRETGY
        YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQEL NVGKK MDD+DP I+ SKMVVEQTIE+GRQSAFTLEG      F +N  GS S I    Y
Subjt:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQIFSIAFDENSHGSCSLIRETGY

XP_022959328.1 uncharacterized protein LOC111460335 isoform X3 [Cucurbita moschata]4.3e-2784.62Show/hide
Query:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        RYTN PAN+RVE+FDERGINE TTDDN+QMTSSITSQELTNVGKKTMDDTDP IE SKMVVEQT+EVGRQS+ T +GQ
Subjt:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

TrEMBL top hitse value%identityAlignment
A0A0A0KCW9 SWIM-type domain-containing protein2.1e-2788.31Show/hide
Query:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        YTNTPANKRVELFDERGINES+TDDNVQMT SI SQEL NVGKK MDD+DP IE SKMVVEQTIE+GRQSAFTLEGQ
Subjt:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

A0A1S3C712 uncharacterized protein LOC103497748 isoform X23.8e-2976.77Show/hide
Query:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQIFSIAFDENSHGSCSLIRETGY
        YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQEL NVGKK MDD+DP I+ SKMVVEQTIE+GRQSAFTLEG      F +N  GS S I    Y
Subjt:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQIFSIAFDENSHGSCSLIRETGY

A0A1S3C8R6 uncharacterized protein LOC103497748 isoform X14.9e-2971.82Show/hide
Query:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSHG
        YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQEL NVGKK MDD+DP I+ SKMVVEQTIE+GRQSAFTLEGQ      I +I      F +N  G
Subjt:  YTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSHG

Query:  SCSLIRETGY
        S S I    Y
Subjt:  SCSLIRETGY

A0A5D3BVG7 MuDR family transposase isoform 11.7e-2972.07Show/hide
Query:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSH
        RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQEL NVGKK MDD+DP I+ SKMVVEQTIE+GRQSAFTLEGQ      I +I      F +N  
Subjt:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ------IFSIA-----FDENSH

Query:  GSCSLIRETGY
        GS S I    Y
Subjt:  GSCSLIRETGY

A0A6J1H5M0 uncharacterized protein LOC111460335 isoform X32.1e-2784.62Show/hide
Query:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        RYTN PAN+RVE+FDERGINE TTDDN+QMTSSITSQELTNVGKKTMDDTDP IE SKMVVEQT+EVGRQS+ T +GQ
Subjt:  RYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

SwissProt top hitse value%identityAlignment
Q944A9 Novel plant SNARE 117.9e-0833.33Show/hide
Query:  CRSIVKIY-------ELGTSGYMQNMLEAQDSGRSK-------LEHRYTNTPA--NKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDP
        C+S++K +       E G       ML  +     K       L+ +Y++  A  NKRV+LFD  G  E   ++NV + S++++QEL + G   MDDTD 
Subjt:  CRSIVKIY-------ELGTSGYMQNMLEAQDSGRSK-------LEHRYTNTPA--NKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDP

Query:  VIECSKMVVEQTIEVGRQSAFTLEGQ
         IE  K +V++TI VG  ++  L+ Q
Subjt:  VIECSKMVVEQTIEVGRQSAFTLEGQ

Q9LNH6 Novel plant SNARE 123.7e-1353.01Show/hide
Query:  LEHRYTNTPANKRVELFDE-RGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        L   Y NT  NK+VELFD   G++ E T ++NVQM S++++QEL + G K MD+TD  IE SK VV QT+EVG Q+A  L+GQ
Subjt:  LEHRYTNTPANKRVELFDE-RGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

Q9LRP1 Novel plant SNARE 136.2e-1353.01Show/hide
Query:  LEHRYTNTPANKRVELFD-ERGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        L   Y +T  NK+VELFD   G++ E T ++NVQ+ SS+++QEL + G K MD+TD  IE SK VVEQT+EVG Q+A  L+GQ
Subjt:  LEHRYTNTPANKRVELFD-ERGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

Arabidopsis top hitse value%identityAlignment
AT1G48240.1 novel plant snare 122.6e-1453.01Show/hide
Query:  LEHRYTNTPANKRVELFDE-RGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        L   Y NT  NK+VELFD   G++ E T ++NVQM S++++QEL + G K MD+TD  IE SK VV QT+EVG Q+A  L+GQ
Subjt:  LEHRYTNTPANKRVELFDE-RGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

AT2G35190.1 novel plant snare 115.6e-0933.33Show/hide
Query:  CRSIVKIY-------ELGTSGYMQNMLEAQDSGRSK-------LEHRYTNTPA--NKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDP
        C+S++K +       E G       ML  +     K       L+ +Y++  A  NKRV+LFD  G  E   ++NV + S++++QEL + G   MDDTD 
Subjt:  CRSIVKIY-------ELGTSGYMQNMLEAQDSGRSK-------LEHRYTNTPA--NKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDP

Query:  VIECSKMVVEQTIEVGRQSAFTLEGQ
         IE  K +V++TI VG  ++  L+ Q
Subjt:  VIECSKMVVEQTIEVGRQSAFTLEGQ

AT3G17440.1 novel plant snare 134.4e-1453.01Show/hide
Query:  LEHRYTNTPANKRVELFD-ERGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        L   Y +T  NK+VELFD   G++ E T ++NVQ+ SS+++QEL + G K MD+TD  IE SK VVEQT+EVG Q+A  L+GQ
Subjt:  LEHRYTNTPANKRVELFD-ERGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ

AT3G17440.2 novel plant snare 134.4e-1453.01Show/hide
Query:  LEHRYTNTPANKRVELFD-ERGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ
        L   Y +T  NK+VELFD   G++ E T ++NVQ+ SS+++QEL + G K MD+TD  IE SK VVEQT+EVG Q+A  L+GQ
Subjt:  LEHRYTNTPANKRVELFD-ERGIN-ESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSAFTLEGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACAAGTTGGTTTTTGCAGATCAATAGTCAAGATTTACGAATTGGGAACTTCTGGATATATGCAGAATATGCTAGAAGCTCAAGATTCAGGTCGAAGTAAGCTGGA
ACACAGGTATACGAATACTCCCGCTAATAAGAGGGTAGAGCTGTTTGATGAGAGAGGCATCAATGAATCTACAACTGATGATAATGTTCAGATGACATCATCAATAACAA
GTCAAGAACTTACCAACGTTGGGAAGAAGACAATGGATGATACTGATCCGGTGATTGAATGCTCTAAAATGGTAGTCGAACAAACCATTGAAGTGGGAAGGCAATCTGCT
TTTACATTGGAAGGCCAAATTTTCTCTATTGCTTTTGACGAAAATTCTCATGGAAGTTGTTCCCTGATCCGCGAGACTGGCTACAACTCTACCCATACCCACTCTATCAC
TTGGAAGTCCCTCCATTGGTTAGCCACATCCTTCAACACCCTTGCTGTTGGGCCATGCTCATACAAGTGCTTCATTGAACTGAGAAGTGATGATTATGTTCTCTTGATAG
GAAAATTGAAAACCTTTGCTGAGAATAACCAGCTTAACCAAAATAGTGGTTGCCAATCGCCATTGCCTCCTACTTACCTCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATACAAGTTGGTTTTTGCAGATCAATAGTCAAGATTTACGAATTGGGAACTTCTGGATATATGCAGAATATGCTAGAAGCTCAAGATTCAGGTCGAAGTAAGCTGGA
ACACAGGTATACGAATACTCCCGCTAATAAGAGGGTAGAGCTGTTTGATGAGAGAGGCATCAATGAATCTACAACTGATGATAATGTTCAGATGACATCATCAATAACAA
GTCAAGAACTTACCAACGTTGGGAAGAAGACAATGGATGATACTGATCCGGTGATTGAATGCTCTAAAATGGTAGTCGAACAAACCATTGAAGTGGGAAGGCAATCTGCT
TTTACATTGGAAGGCCAAATTTTCTCTATTGCTTTTGACGAAAATTCTCATGGAAGTTGTTCCCTGATCCGCGAGACTGGCTACAACTCTACCCATACCCACTCTATCAC
TTGGAAGTCCCTCCATTGGTTAGCCACATCCTTCAACACCCTTGCTGTTGGGCCATGCTCATACAAGTGCTTCATTGAACTGAGAAGTGATGATTATGTTCTCTTGATAG
GAAAATTGAAAACCTTTGCTGAGAATAACCAGCTTAACCAAAATAGTGGTTGCCAATCGCCATTGCCTCCTACTTACCTCAGATGA
Protein sequenceShow/hide protein sequence
MIQVGFCRSIVKIYELGTSGYMQNMLEAQDSGRSKLEHRYTNTPANKRVELFDERGINESTTDDNVQMTSSITSQELTNVGKKTMDDTDPVIECSKMVVEQTIEVGRQSA
FTLEGQIFSIAFDENSHGSCSLIRETGYNSTHTHSITWKSLHWLATSFNTLAVGPCSYKCFIELRSDDYVLLIGKLKTFAENNQLNQNSGCQSPLPPTYLR