; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024715 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024715
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:10512606..10524294
RNA-Seq ExpressionSpg024715
SyntenySpg024715
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]4.4e-1770.51Show/hide
Query:  MQSQPLQSVFNLATSRF-LVGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLESYIES
        MQSQPLQ++       F L  LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLE Y ES
Subjt:  MQSQPLQSVFNLATSRF-LVGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLESYIES

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.3e-1864.44Show/hide
Query:  TWLESYIESSTGFSSKAGGPLVLSDVLSILGCTSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV
        ++LE     ST F SK+GG LV SD LSIL           PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+S+TWLELY ESV
Subjt:  TWLESYIESSTGFSSKAGGPLVLSDVLSILGCTSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]3.1e-1848.94Show/hide
Query:  STGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWLELYIESV
        STGFSSK GG LV S+ LSIL    +++    +WPRGN  SLQTGELDKT                 VEIELPV DTL TSAESS S+S+TWL+LY ES+
Subjt:  STGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWLELYIESV

Query:  TFQ------TEICPGGTSCMLKCFQGFRCVVVHMECYISMI
          +      +++      C  + F+GFRCVV H+E  IS I
Subjt:  TFQ------TEICPGGTSCMLKCFQGFRCVVVHMECYISMI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]9.9e-1765.56Show/hide
Query:  SYIE--SSTGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV
        SY+E   STG SSK  G LV SD LS+L    + +    +WPRGNR SLQT ELDKT  IELPVPDTLPTSAESS S+S+TWLELY ESV
Subjt:  SYIE--SSTGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.7e-1662.24Show/hide
Query:  STGFSSKAGGPLVLSDVLSILGCTSRIPSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWLELYIESV
        STGFSSK GG LVLSD LSIL    ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+S+TWLELY ESV
Subjt:  STGFSSKAGGPLVLSDVLSILGCTSRIPSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWLELYIESV

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein2.1e-1770.51Show/hide
Query:  MQSQPLQSVFNLATSRF-LVGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLESYIES
        MQSQPLQ++       F L  LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLE Y ES
Subjt:  MQSQPLQSVFNLATSRF-LVGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLESYIES

A0A5A7UAH6 CCHC-type domain-containing protein1.1e-1864.44Show/hide
Query:  TWLESYIESSTGFSSKAGGPLVLSDVLSILGCTSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV
        ++LE     ST F SK+GG LV SD LSIL           PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+S+TWLELY ESV
Subjt:  TWLESYIESSTGFSSKAGGPLVLSDVLSILGCTSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV

A0A5A7UEC1 Uncharacterized protein1.5e-1848.94Show/hide
Query:  STGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWLELYIESV
        STGFSSK GG LV S+ LSIL    +++    +WPRGN  SLQTGELDKT                 VEIELPV DTL TSAESS S+S+TWL+LY ES+
Subjt:  STGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWLELYIESV

Query:  TFQ------TEICPGGTSCMLKCFQGFRCVVVHMECYISMI
          +      +++      C  + F+GFRCVV H+E  IS I
Subjt:  TFQ------TEICPGGTSCMLKCFQGFRCVVVHMECYISMI

A0A5D3CJX3 CCHC-type domain-containing protein8.2e-1762.24Show/hide
Query:  STGFSSKAGGPLVLSDVLSILGCTSRIPSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWLELYIESV
        STGFSSK GG LVLSD LSIL    ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+S+TWLELY ESV
Subjt:  STGFSSKAGGPLVLSDVLSILGCTSRIPSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWLELYIESV

A0A5D3DWP3 Uncharacterized protein4.8e-1765.56Show/hide
Query:  SYIE--SSTGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV
        SY+E   STG SSK  G LV SD LS+L    + +    +WPRGNR SLQT ELDKT  IELPVPDTLPTSAESS S+S+TWLELY ESV
Subjt:  SYIE--SSTGFSSKAGGPLVLSDVLSILGC--TSRIPSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAATCTGTGTTCAACCTGGCAACCTCTCGTTTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCT
ACAAACTGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTCGT
ATATTGAGTCCAGCACAGGATTTTCGAGCAAAGCAGGAGGACCTTTGGTTCTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCCAAGCTCTATTTGGCCA
AGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTC
CAATACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCGAGATATGTCCGGGCGGCACCTCGTGTATGTTGAAATGTTTTCAGGGTTTCCGCTGTGTTGTGG
TTCATATGGAATGTTATATATCTATGATTACGGCGGATTTTGCTGCAACACACGATTCTGCTGGGGTTCATCTTGACCTTCTAGAACTTCCGGGAGACGCGCCACATTAT
CCATTGGATTCTGATTTCTACGCTGCTCTCTCCTTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAATCTGTGTTCAACCTGGCAACCTCTCGTTTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCT
ACAAACTGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTCGT
ATATTGAGTCCAGCACAGGATTTTCGAGCAAAGCAGGAGGACCTTTGGTTCTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCCAAGCTCTATTTGGCCA
AGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTC
CAATACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCGAGATATGTCCGGGCGGCACCTCGTGTATGTTGAAATGTTTTCAGGGTTTCCGCTGTGTTGTGG
TTCATATGGAATGTTATATATCTATGATTACGGCGGATTTTGCTGCAACACACGATTCTGCTGGGGTTCATCTTGACCTTCTAGAACTTCCGGGAGACGCGCCACATTAT
CCATTGGATTCTGATTTCTACGCTGCTCTCTCCTTCTCTTGA
Protein sequenceShow/hide protein sequence
MQSQPLQSVFNLATSRFLVGLSYTEGIKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLESYIESSTGFSSKAGGPLVLSDVLSILGCTSRIPSSIWP
RGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSNTWLELYIESVTFQTEICPGGTSCMLKCFQGFRCVVVHMECYISMITADFAATHDSAGVHLDLLELPGDAPHY
PLDSDFYAALSFS