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Spg024716 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024716
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:11264705..11265919
RNA-Seq ExpressionSpg024716
SyntenySpg024716
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.7e-2150.75Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGIVRGDDVCWLHAVFQAKLACGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWL                           NVSVGSTGIVRGDDVCWLHAVF+ K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGIVRGDDVCWLHAVFQAKLACGPG

Query:  GAPNTGLDRPNRPKPLQTSYENHEPSKILAEPDQ
            T     +R  P +TS    +      +P Q
Subjt:  GAPNTGLDRPNRPKPLQTSYENHEPSKILAEPDQ

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2057.89Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL + V           GIVR DDVCWLHAVF+AK A GPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA

Query:  ----PNTGLDRPNR
            P +   RPN+
Subjt:  ----PNTGLDRPNR

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.5e-1757.84Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------LNVSVGSTGIVRGDDVCWLHAVFQAKLACGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +            N+SV STGIVRGDDVCWLHAVF+AK   GP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------LNVSVGSTGIVRGDDVCWLHAVFQAKLACGP

Query:  GG
         G
Subjt:  GG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]4.7e-1650Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSVGSTGIVRGDDVCWLHAVFQAKLACGPGGAPNTGLDRP
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S         S GIVR DDVCWLH+VF+AK A GPGG   T     
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSVGSTGIVRGDDVCWLHAVFQAKLACGPGGAPNTGLDRP

Query:  NRPKPLQTSYENHEPSKILAEPDQ
        +R  P +TS    +    +  P Q
Subjt:  NRPKPLQTSYENHEPSKILAEPDQ

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2057.89Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL + V           GIVR DDVCWLHAVF+AK A GPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA

Query:  ----PNTGLDRPNR
            P +   RPN+
Subjt:  ----PNTGLDRPNR

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein8.1e-2250.75Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGIVRGDDVCWLHAVFQAKLACGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWL                           NVSVGSTGIVRGDDVCWLHAVF+ K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGIVRGDDVCWLHAVFQAKLACGPG

Query:  GAPNTGLDRPNRPKPLQTSYENHEPSKILAEPDQ
            T     +R  P +TS    +      +P Q
Subjt:  GAPNTGLDRPNRPKPLQTSYENHEPSKILAEPDQ

A0A5A7VMG9 Reverse transcriptase6.8e-2157.89Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL + V           GIVR DDVCWLHAVF+AK A GPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA

Query:  ----PNTGLDRPNR
            P +   RPN+
Subjt:  ----PNTGLDRPNR

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.2e-1757.84Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------LNVSVGSTGIVRGDDVCWLHAVFQAKLACGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +            N+SV STGIVRGDDVCWLHAVF+AK   GP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------LNVSVGSTGIVRGDDVCWLHAVFQAKLACGP

Query:  GG
         G
Subjt:  GG

A0A5D3CU23 Retrotrans_gag domain-containing protein2.3e-1650Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSVGSTGIVRGDDVCWLHAVFQAKLACGPGGAPNTGLDRP
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S         S GIVR DDVCWLH+VF+AK A GPGG   T     
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSVGSTGIVRGDDVCWLHAVFQAKLACGPGGAPNTGLDRP

Query:  NRPKPLQTSYENHEPSKILAEPDQ
        +R  P +TS    +    +  P Q
Subjt:  NRPKPLQTSYENHEPSKILAEPDQ

A0A5D3DX39 Reverse transcriptase6.8e-2157.89Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWL + V           GIVR DDVCWLHAVF+AK A GPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV--------GSTGIVRGDDVCWLHAVFQAKLACGPGGA

Query:  ----PNTGLDRPNR
            P +   RPN+
Subjt:  ----PNTGLDRPNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGCTGAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCAGGCTAAGCTAGCATGTGGTCCGGGAG
GGGCTCCAAATACTGGTCTAGACCGGCCGAACCGACCCAAACCACTTCAAACCAGCTACGAAAACCACGAACCGAGCAAAATTCTAGCTGAACCGGACCAAATCGGTCCC
AGCCCATCCAGACTGCGTGAACCGGACCGCCCAACCGCCTTGATCCGTCCTGTTGCGAATCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGCTGAATGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCAGGCTAAGCTAGCATGTGGTCCGGGAG
GGGCTCCAAATACTGGTCTAGACCGGCCGAACCGACCCAAACCACTTCAAACCAGCTACGAAAACCACGAACCGAGCAAAATTCTAGCTGAACCGGACCAAATCGGTCCC
AGCCCATCCAGACTGCGTGAACCGGACCGCCCAACCGCCTTGATCCGTCCTGTTGCGAATCCCTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLNVSVGSTGIVRGDDVCWLHAVFQAKLACGPGGAPNTGLDRPNRPKPLQTSYENHEPSKILAEPDQIGP
SPSRLREPDRPTALIRPVANP