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Spg024725 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024725
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold12:8921854..8924390
RNA-Seq ExpressionSpg024725
SyntenySpg024725
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]6.2e-0537.38Show/hide
Query:  IHVDATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKFNRKWYGSSGFGGVLKSSK
        ++VDA  + +N + G G VIR SNG + AA   +N +   +  AEA A+L GLQLA   D   + + SD L ++ L N TK +R    S  F  +L    
Subjt:  IHVDATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKFNRKWYGSSGFGGVLKSSK

Query:  MKKAEQK
          K  QK
Subjt:  MKKAEQK
TrEMBL top hitse value%identityAlignment
A0A6J1CNR4 uncharacterized protein LOC1110129505.6e-0436.67Show/hide
Query:  IHVDATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKFNRKWYGSS
        I+VD  C +    T  G+V R   G + AA   R   +   L AE+ A+LEGL+LA  ++ +++   SDSL LI+L   T+    W GS+
Subjt:  IHVDATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKFNRKWYGSS
A0A6P9EG87 uncharacterized protein LOC1183488765.6e-0432.94Show/hide
Query:  DATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKFNRKWYG
        DA  DE+NC  G G++IR S G+V AA      M   ++  EA A+   +++  +M F K+    D+L +I+          WYG
Subjt:  DATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKFNRKWYG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGCTAGTAGGAGATGTACGAGGAATATTAGGAAGAAGGAATTGCTTTACAATGATAGTAATGAGAATGATGAGTTGATAATTCACGTGGATGCGACGTGTGATGA
AAGGAATTGTACTACTGGGTATGGGGTGGTGATTCGTGCTTCTAATGGTGATGTAAAGGCGGCTATGCATGGCCGAAATTCGATGTTTATTTTGTCGTTGTGTGCAGAGG
CAAGAGCTATGTTGGAAGGTCTTCAACTGGCTCCTCAGATGGATTTCAGGAAAATTTGTCTGATGTCTGATTCGCTAAATTTGATTTCACTTTTTAATGGTACCAAATTT
AATAGAAAATGGTACGGCAGCAGTGGTTTTGGTGGCGTTCTTAAATCAAGCAAAATGAAGAAAGCAGAGCAAAAAACTCCCCCGTATGAAAGGAGATCTGGACAGATTAT
CCGTAATCTGGCTCTAAGAGCAACTCCTCCGTATGAAAGGAGATCTGAACGGATACAATCCGTAATTTGGCTCGGCTCTAAGAGCAAACTCCGAATCCGTAATCTGGCTC
TAAGAGCAAACTCCTCTGTATCAAAGGAGATATGGACGGATAGAATCCGTAATCTGGCTCTAAGAGAAAAACTCCTCCCTATGAAAGGAGATATGGACGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGCTAGTAGGAGATGTACGAGGAATATTAGGAAGAAGGAATTGCTTTACAATGATAGTAATGAGAATGATGAGTTGATAATTCACGTGGATGCGACGTGTGATGA
AAGGAATTGTACTACTGGGTATGGGGTGGTGATTCGTGCTTCTAATGGTGATGTAAAGGCGGCTATGCATGGCCGAAATTCGATGTTTATTTTGTCGTTGTGTGCAGAGG
CAAGAGCTATGTTGGAAGGTCTTCAACTGGCTCCTCAGATGGATTTCAGGAAAATTTGTCTGATGTCTGATTCGCTAAATTTGATTTCACTTTTTAATGGTACCAAATTT
AATAGAAAATGGTACGGCAGCAGTGGTTTTGGTGGCGTTCTTAAATCAAGCAAAATGAAGAAAGCAGAGCAAAAAACTCCCCCGTATGAAAGGAGATCTGGACAGATTAT
CCGTAATCTGGCTCTAAGAGCAACTCCTCCGTATGAAAGGAGATCTGAACGGATACAATCCGTAATTTGGCTCGGCTCTAAGAGCAAACTCCGAATCCGTAATCTGGCTC
TAAGAGCAAACTCCTCTGTATCAAAGGAGATATGGACGGATAGAATCCGTAATCTGGCTCTAAGAGAAAAACTCCTCCCTATGAAAGGAGATATGGACGGATAG
Protein sequenceShow/hide protein sequence
MGASRRCTRNIRKKELLYNDSNENDELIIHVDATCDERNCTTGYGVVIRASNGDVKAAMHGRNSMFILSLCAEARAMLEGLQLAPQMDFRKICLMSDSLNLISLFNGTKF
NRKWYGSSGFGGVLKSSKMKKAEQKTPPYERRSGQIIRNLALRATPPYERRSERIQSVIWLGSKSKLRIRNLALRANSSVSKEIWTDRIRNLALREKLLPMKGDMDG