; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024732 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024732
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:14000203..14014928
RNA-Seq ExpressionSpg024732
SyntenySpg024732
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]6.3e-0433.09Show/hide
Query:  WMLWIIASVSDTR-WVVSHSVTRIR----PRGNRSSLQTRKLAKT----------RSSSWCLIHCQHLLKALDQAPEGQRVS---------LEEDDVCWL
        W  W+  S S  + WV+   ++ +     PRGNR SLQT +L KT             +  ++  +  L   D  P     S         + EDDVCWL
Subjt:  WMLWIIASVSDTR-WVVSHSVTRIR----PRGNRSSLQTRKLAKT----------RSSSWCLIHCQHLLKALDQAPEGQRVS---------LEEDDVCWL

Query:  HTIFRTKLAGGPGRVVREEQPETLGQRRFRRRVNNK
        H +FR K AGGPG  V       +  R  RRR  NK
Subjt:  HTIFRTKLAGGPGRVVREEQPETLGQRRFRRRVNNK
TrEMBL top hitse value%identityAlignment
A0A5D3BSA6 Retrotrans_gag domain-containing protein3.1e-0433.09Show/hide
Query:  WMLWIIASVSDTR-WVVSHSVTRIR----PRGNRSSLQTRKLAKT----------RSSSWCLIHCQHLLKALDQAPEGQRVS---------LEEDDVCWL
        W  W+  S S  + WV+   ++ +     PRGNR SLQT +L KT             +  ++  +  L   D  P     S         + EDDVCWL
Subjt:  WMLWIIASVSDTR-WVVSHSVTRIR----PRGNRSSLQTRKLAKT----------RSSSWCLIHCQHLLKALDQAPEGQRVS---------LEEDDVCWL

Query:  HTIFRTKLAGGPGRVVREEQPETLGQRRFRRRVNNK
        H +FR K AGGPG  V       +  R  RRR  NK
Subjt:  HTIFRTKLAGGPGRVVREEQPETLGQRRFRRRVNNK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTCGTGACGAGCCCGAAGAATGGTTCCAAGGAGTCAAAGCATAGGGTCGCGGGTTTTATGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGAC
TAATCGGCTTAAACTCATTAACCAAGTTAGTCTTCATTCGTTAACTGTGGGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACATCAGAATATTTCTGTGTCCAC
GGATATCGACCAATACTACAAGTCAGTCCTTCACGTGTGTTCCTAATGCTCTTAAAAATATAACTGTGGTGAGTAATGTTCAGCAGCCGCCAGTGGTGGAGCATGCTGCA
GTTGTAAACCAACCTAGTAAACCCAAGGGAGTAGATAAGAGTAGTGATAGAAATGATGTTGTCGAGAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAAAGA
TGCTGGAGCAACTAGTTCTGTTCCAGATGTAGAATCATCGAAGGAGCCGTCTCTGAAGGAATTGAATGAAGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATT
GGGACCAATTCTGTGAACACCACCACTATGGCTACACCGGAATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGAGATACCCC
CACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGT
ATCGGATACAAGGTGGGTCGTATCACATAGTGTCACCAGGATAAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAAGATCGAGCTCCTGGT
GCCTGATACACTGCCAACATCTGCTGAAAGCTCTTGATCAAGCTCCAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCGGACT
AAGCTAGCAGGTGGTCCGGGAAGGGTTGTTAGAGAAGAGCAACCAGAAACTCTTGGGCAAAGAAGGTTCCGAAGACGAGTGAACAACAAGCCGAGGTTCAGCAAGAGAAT
CAAGAACAGCAAGAAGTGGTGCAGGAGGAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCTGCTTTGTATTATGATACAAACGCAATGATCCAAC
GCGTTCATGTAGTGGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAGACCGGACCGCGAGATAGTTGTTCATTAGAGGAGCACTGGGGACTTAAGGACAAA
GATACTCCCACCAGTCTCCTGCCTCCAGTAGTCTCAGAGATATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCGTTTTCGATCTCACAAGCAAGAA
AAGGCGAATCGATCAAGGCTTCCTGCGAAAGGCTTTTATCCCTTCAGGTCTTATACAAACTCCTTTGTATAGGACGCCTCACTCGCATAAGGTTGAGGAGGATGAGGTCG
CGGAGAAGCAACGTGAGGACAGAGGAAAAAGAGTTGAGGAACATGAGGACGAGGAGGCAGAGGAACAGCGTCTGCCGTATGAACGCTTCATCAACAATCTTGCTAGAGCA
AAACATCGAGAGATGTTGAAGCGAGATTTTCTGTTCGAGAGAGGGTTTGGCGACAACCTACCGCACTTTTTGAGAGCTGGAATTACAAACCATGGCTGGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTCGTGACGAGCCCGAAGAATGGTTCCAAGGAGTCAAAGCATAGGGTCGCGGGTTTTATGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATACGAGAC
TAATCGGCTTAAACTCATTAACCAAGTTAGTCTTCATTCGTTAACTGTGGGTCATTCCACTAAAGACCCTCAGCTGCACTCTTCTCACATCAGAATATTTCTGTGTCCAC
GGATATCGACCAATACTACAAGTCAGTCCTTCACGTGTGTTCCTAATGCTCTTAAAAATATAACTGTGGTGAGTAATGTTCAGCAGCCGCCAGTGGTGGAGCATGCTGCA
GTTGTAAACCAACCTAGTAAACCCAAGGGAGTAGATAAGAGTAGTGATAGAAATGATGTTGTCGAGAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAAAGA
TGCTGGAGCAACTAGTTCTGTTCCAGATGTAGAATCATCGAAGGAGCCGTCTCTGAAGGAATTGAATGAAGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATT
GGGACCAATTCTGTGAACACCACCACTATGGCTACACCGGAATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGAGATACCCC
CACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGATACCCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTGCATCTGT
ATCGGATACAAGGTGGGTCGTATCACATAGTGTCACCAGGATAAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAAGATCGAGCTCCTGGT
GCCTGATACACTGCCAACATCTGCTGAAAGCTCTTGATCAAGCTCCAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACACCATCTTCCGGACT
AAGCTAGCAGGTGGTCCGGGAAGGGTTGTTAGAGAAGAGCAACCAGAAACTCTTGGGCAAAGAAGGTTCCGAAGACGAGTGAACAACAAGCCGAGGTTCAGCAAGAGAAT
CAAGAACAGCAAGAAGTGGTGCAGGAGGAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCTGCTTTGTATTATGATACAAACGCAATGATCCAAC
GCGTTCATGTAGTGGACATGCGAGTGGGGGTATCCTGTGCAATGAGTTTGCACAAGACCGGACCGCGAGATAGTTGTTCATTAGAGGAGCACTGGGGACTTAAGGACAAA
GATACTCCCACCAGTCTCCTGCCTCCAGTAGTCTCAGAGATATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCGTTTTCGATCTCACAAGCAAGAA
AAGGCGAATCGATCAAGGCTTCCTGCGAAAGGCTTTTATCCCTTCAGGTCTTATACAAACTCCTTTGTATAGGACGCCTCACTCGCATAAGGTTGAGGAGGATGAGGTCG
CGGAGAAGCAACGTGAGGACAGAGGAAAAAGAGTTGAGGAACATGAGGACGAGGAGGCAGAGGAACAGCGTCTGCCGTATGAACGCTTCATCAACAATCTTGCTAGAGCA
AAACATCGAGAGATGTTGAAGCGAGATTTTCTGTTCGAGAGAGGGTTTGGCGACAACCTACCGCACTTTTTGAGAGCTGGAATTACAAACCATGGCTGGGAGTAG
Protein sequenceShow/hide protein sequence
MRVVTSPKNGSKESKHRVAGFMGPNGPTDQKLQRYETNRLKLINQVSLHSLTVGHSTKDPQLHSSHIRIFLCPRISTNTTSQSFTCVPNALKNITVVSNVQQPPVVEHAA
VVNQPSKPKGVDKSSDRNDVVEKELESGKNDGDSNKDAGATSSVPDVESSKEPSLKELNEGLEFRNSVKRKRDWDQFCEHHHYGYTGMTLRLLEAGDLWEPLGEFSERYP
HPHVSYMDALDHCICIEYKDTPTRMSPTWMLWIIASVSDTRWVVSHSVTRIRPRGNRSSLQTRKLAKTRSSSWCLIHCQHLLKALDQAPEGQRVSLEEDDVCWLHTIFRT
KLAGGPGRVVREEQPETLGQRRFRRRVNNKPRFSKRIKNSKKWCRRRDKAGYLILVTLWIRPALYYDTNAMIQRVHVVDMRVGVSCAMSLHKTGPRDSCSLEEHWGLKDK
DTPTSLLPPVVSEIYRCNQLVVFAQEGCCVFDLTSKKRRIDQGFLRKAFIPSGLIQTPLYRTPHSHKVEEDEVAEKQREDRGKRVEEHEDEEAEEQRLPYERFINNLARA
KHREMLKRDFLFERGFGDNLPHFLRAGITNHGWE