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Spg024740 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024740
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold12:11268932..11270667
RNA-Seq ExpressionSpg024740
SyntenySpg024740
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-2260.34Show/hide
Query:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR
        STGFSSK GG LVFSD LSI                  P+GNR  LQTGEL K               LSTLS LRDNDAVVEIELP+PDTLPTSAESS 
Subjt:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.2e-2343.36Show/hide
Query:  HFKEGVKEEEEEEFLGLRLKKIGKSSCKAIHCRICVQPVNFWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSILG-----------------------
        HF+E VK EEEEEF GLRLKKIGKSSCKA HCRI       W             STGFSSK  G LVFSD LSIL                        
Subjt:  HFKEGVKEEEEEEFLGLRLKKIGKSSCKAIHCRICVQPVNFWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSILG-----------------------

Query:  PKGNRSSLQTGELAKTPEAIWYRVH------------TGYISLSTLSGLRDNDAVV----------------------------------------EIEL
        P+GNRSSLQTG+L K   +I Y                    LSTLS LRDNDAVV                                        EIEL
Subjt:  PKGNRSSLQTGELAKTPEAIWYRVH------------TGYISLSTLSGLRDNDAVV----------------------------------------EIEL

Query:  PVPDTLPTSAESSRSSSSTWLELYIE
         VPDTLPTSAESS S+SSTWLE   E
Subjt:  PVPDTLPTSAESSRSSSSTWLELYIE

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.3e-2360.47Show/hide
Query:  VNFWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSI-----------LGPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELP
        VN W F  F L +    +STGFSSK GG LV SD LSI           LGP+GNR SLQTGEL KT             SLSTLS LRDN+AV  IELP
Subjt:  VNFWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSI-----------LGPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIESVHI
        VPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  VPDTLPTSAESSRSSSSTWLELYIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-2260.34Show/hide
Query:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR
        STGFSSK GG LVFSD LSI                  P+GNR  LQTGEL K               LSTLS LRDNDAVVEIELP+PDTLPTSAESS 
Subjt:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.1e-2259.06Show/hide
Query:  RDQESTGFSSKAGGSLVFSDVLSIL------------GPKGNRSSLQTGELAKT------PEAIWYR----VHTGYI-SLSTLSGLRDNDAVVEIELPVP
        R ++STGFSSK GG LVFSD LSIL             P+ NR SLQTGEL KT       E +  R    V T  I  LSTLS LRDNDAVVEIELPVP
Subjt:  RDQESTGFSSKAGGSLVFSDVLSIL------------GPKGNRSSLQTGELAKT------PEAIWYR----VHTGYI-SLSTLSGLRDNDAVVEIELPVP

Query:  DTLPTSAESSRSSSSTWLELYIESVHI
        DTLP+S ES  S+SSTWLELY E VH+
Subjt:  DTLPTSAESSRSSSSTWLELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.0e-2260.34Show/hide
Query:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR
        STGFSSK GG LVFSD LSI                  P+GNR  LQTGEL K               LSTLS LRDNDAVVEIELP+PDTLPTSAESS 
Subjt:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

A0A5D3CAC6 Uncharacterized protein1.0e-2343.36Show/hide
Query:  HFKEGVKEEEEEEFLGLRLKKIGKSSCKAIHCRICVQPVNFWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSILG-----------------------
        HF+E VK EEEEEF GLRLKKIGKSSCKA HCRI       W             STGFSSK  G LVFSD LSIL                        
Subjt:  HFKEGVKEEEEEEFLGLRLKKIGKSSCKAIHCRICVQPVNFWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSILG-----------------------

Query:  PKGNRSSLQTGELAKTPEAIWYRVH------------TGYISLSTLSGLRDNDAVV----------------------------------------EIEL
        P+GNRSSLQTG+L K   +I Y                    LSTLS LRDNDAVV                                        EIEL
Subjt:  PKGNRSSLQTGELAKTPEAIWYRVH------------TGYISLSTLSGLRDNDAVV----------------------------------------EIEL

Query:  PVPDTLPTSAESSRSSSSTWLELYIE
         VPDTLPTSAESS S+SSTWLE   E
Subjt:  PVPDTLPTSAESSRSSSSTWLELYIE

A0A5D3CJX3 CCHC-type domain-containing protein6.1e-2460.47Show/hide
Query:  VNFWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSI-----------LGPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELP
        VN W F  F L +    +STGFSSK GG LV SD LSI           LGP+GNR SLQTGEL KT             SLSTLS LRDN+AV  IELP
Subjt:  VNFWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSI-----------LGPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIESVHI
        VPDTLPTSAESS S+SSTWLELY ESVH+
Subjt:  VPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5D3DR18 Gag/pol protein2.0e-2260.34Show/hide
Query:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR
        STGFSSK GG LVFSD LSI                  P+GNR  LQTGEL K               LSTLS LRDNDAVVEIELP+PDTLPTSAESS 
Subjt:  STGFSSKAGGSLVFSDVLSIL----------------GPKGNRSSLQTGELAKTPEAIWYRVHTGYISLSTLSGLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTWLELYIESVHI
        S+SSTWLELY ESVH+
Subjt:  SSSSTWLELYIESVHI

A0A5D3DW05 Putative DNA/RNA polymerases superfamily protein1.5e-2259.06Show/hide
Query:  RDQESTGFSSKAGGSLVFSDVLSIL------------GPKGNRSSLQTGELAKT------PEAIWYR----VHTGYI-SLSTLSGLRDNDAVVEIELPVP
        R ++STGFSSK GG LVFSD LSIL             P+ NR SLQTGEL KT       E +  R    V T  I  LSTLS LRDNDAVVEIELPVP
Subjt:  RDQESTGFSSKAGGSLVFSDVLSIL------------GPKGNRSSLQTGELAKT------PEAIWYR----VHTGYI-SLSTLSGLRDNDAVVEIELPVP

Query:  DTLPTSAESSRSSSSTWLELYIESVHI
        DTLP+S ES  S+SSTWLELY E VH+
Subjt:  DTLPTSAESSRSSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCATCCATTGCAGAATCTGTGTTCA
ACCTGTCAACTTTTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAGGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGA
GCATTCTGGGGCCAAAAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACG
TTGAGTGGACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGA
GTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
CACTTTAAGGAGGGAGTGAAGGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCATCCATTGCAGAATCTGTGTTCA
ACCTGTCAACTTTTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAGGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGA
GCATTCTGGGGCCAAAAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACG
TTGAGTGGACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGA
GTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
HFKEGVKEEEEEEFLGLRLKKIGKSSCKAIHCRICVQPVNFWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSILGPKGNRSSLQTGELAKTPEAIWYRVHTGYISLST
LSGLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVL