; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024757 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024757
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold12:12991265..12999319
RNA-Seq ExpressionSpg024757
SyntenySpg024757
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1750Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR S FQR+S+   EEENQC  ST+ R SAF+RL                     NDQ QR++ +L+ K F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSLKLR
         K++S V SRMKRK SV INTE SL ++
Subjt:  KKLQSTVLSRMKRKFSVLINTESSLKLR

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-1853.6Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR SVFQR+SI   EEENQC  ST TR SAF+ L                     NDQ QR++ +L+VK F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSL
         K+ S V SRMKRK SV INTE SL
Subjt:  KKLQSTVLSRMKRKFSVLINTESSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-1850.78Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC  ST+ R SAF+RL                     NDQ QR++ +L+ K F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSLKLR
         K+ S V SRMKRK SV INTE SL ++
Subjt:  KKLQSTVLSRMKRKFSVLINTESSLKLR

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1850.78Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC MST+TR SAF+RL                     NDQ QR++ +L+ K F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSLKLR
         K+ S V SR+KRK S+ INTE SL ++
Subjt:  KKLQSTVLSRMKRKFSVLINTESSLKLR

TYK19591.1 hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]1.6e-1749.19Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        +EVDN  K +QRTSVFDRIK S TR  VFQR+S+   EEENQC MST+TR SAF++L                     N+Q QR++ +L+VK F E ++D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESS
         ++ S V SRMKRK SV+INT+ +
Subjt:  KKLQSTVLSRMKRKFSVLINTESS

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein5.9e-1850Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR S FQR+S+   EEENQC  ST+ R SAF+RL                     NDQ QR++ +L+ K F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSLKLR
         K++S V SRMKRK SV INTE SL ++
Subjt:  KKLQSTVLSRMKRKFSVLINTESSLKLR

A0A5A7TGM1 Retrotransposon gag protein3.4e-1853.6Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR SVFQR+SI   EEENQC  ST TR SAF+ L                     NDQ QR++ +L+VK F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSL
         K+ S V SRMKRK SV INTE SL
Subjt:  KKLQSTVLSRMKRKFSVLINTESSL

A0A5A7TQ06 Retrotransposon gag protein3.4e-1850.78Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC  ST+ R SAF+RL                     NDQ QR++ +L+ K F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSLKLR
         K+ S V SRMKRK SV INTE SL ++
Subjt:  KKLQSTVLSRMKRKFSVLINTESSLKLR

A0A5A7U974 Retrotransposon gag protein9.1e-1950.78Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        EEVDN  + +QRTSVFDRIK  TTR SVFQR+S+   EEENQC MST+TR SAF+RL                     NDQ QR++ +L+ K F E + D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESSLKLR
         K+ S V SR+KRK S+ INTE SL ++
Subjt:  KKLQSTVLSRMKRKFSVLINTESSLKLR

A0A5D3D7Q8 Uncharacterized protein7.7e-1849.19Show/hide
Query:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD
        +EVDN  K +QRTSVFDRIK S TR  VFQR+S+   EEENQC MST+TR SAF++L                     N+Q QR++ +L+VK F E ++D
Subjt:  EEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVATEEENQCSMSTFTRPSAFQRL---------------------NDQPQRKIDNLEVKLFDEVSSD

Query:  KKLQSTVLSRMKRKFSVLINTESS
         ++ S V SRMKRK SV+INT+ +
Subjt:  KKLQSTVLSRMKRKFSVLINTESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACGACGACGGACGGCGAGGCGAACGGCAGCAGAGGGAAAAATGACGGAGAGAGAACAAAGAGCTCGAGAGGGGGCTGTCGAAGTCAAGAGAGAGAGGCGAAATGA
GAAGAGGGAAAAAGTAAGGGCTTTTTTGCCCAGTTTTTTGTCGACGCCGTTAGTAACGGCGTCGGCAAAAATGGCCTCTCTCGACGCCGTCAGAGAGAGAGGAATTGAAA
TCAAGGAGGATCAAACACCTCTCGTTGTTGCAAGCAGGATTTCGAAACTGATTGAGGAATCGTCCAAAGACAAGTTTGCTATCAAGGACAACCCATTATTCGACACATTC
ACTCCAACCTCTGAGCAGTTGAAGGACACACCAAATCCTAATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGGATGACAGAGATGGAAAGAAAACTCAA
CCTCCTAATGAAGGCAATTGAGGAAAGGGATCACAAGATTGCCTATTTGAAGAATCAACTGCAAAATCAAGAGGAAAAAGCAAACCTTGCAACTTCCTACTGCATCGACG
TAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCATTCAACTACTCGTCCTTCGGTGTTCCAAAGAATGAGTATAGTTGCG
ACAGAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTT
CGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTACTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAGAAAGTTCCTTGAAGCTTCGCACGCTAC
GTTGCTTCGCTGCTATTCCTTCGCCAAGTTCAAAGGTTCACACGCTGTATGCTGCTTCACTGTTGTTCCTTCTTCAAGTTCGAAGGTTTGCACGTTGTTATGTTGCTTCG
TTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGTTGTTTCGCTGCAGTTCTTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCACTATAGTTCCTTCTCTCCAAGT
TCGAAGGTTCTCACGTTGTTTCGCTGCAGTTTCTTCTCTCCAATTTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCT
TCGTTGTAACTCCTTCTCCAATTTTGAAGGTTCTCACACTGCTTTGCTGCAGTTCTTTCTCCAATTTCGAAGGTTCTCACGCTGCTTTGCTGCAGTTCCTTCTCTCCGCT
GCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCGCTGCAATTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACTTGTTCCTTCTCCAAGTTCGAAGGTTCTC
ACGCTGCTTCACTGTAGTTCCTTCCTCAAAATTCGAAGGTTCTCATGCTGCTTCACTGCTTGTTCCTTCTCCAAGTTCGAAGGTTCTAACGTTGCTTCGCTGCAGTTCCT
TCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTCGCTGTAGTTCCTTCTCCAAGTTCAAAGGATCTTTGAGCTTAGGCATGTCGGGAGTCGATCACGCTAATTTGGTGTTA
ATTCGAGCCAATTACGAAGTTTTGGAGCCATCTCGGTGTCTTAGATGGCGAGGAGTTTTGCATGTTATCCCGTTTAAACCAATACATGAGGCTAGTCTATTAGGATTGAC
GACCCTATGTGATTACCGCTTGTTTACGAAGGTTGTTCTCCCTACTGCTAAGGTTCTGCCTGAATCTGAGGATGATCACTTCTCAAGGAAGGACGCGAGGGGGGTTTCAC
CACTTCCCAAAGAAGGATGCAAGGGGGCAAGTGATCAGACTGAAATTTTTCCTGAATCAGGATTTGATCACTTCCCAAGGAAGAATGCGAGGGGGCAAGTGGAAGAATAT
GAGGGAGCAAGTGGTCAGACTGAAATTCTGCCTAAACTAGGGTTTGGCCACTTCCCAAAGAATGATGCAAGGGGACAAGTGATCAGACTGAAATTCCGCCTGAATCAGGG
TTTAATCACTTCCCAAGGAAGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGACGACGACGGACGGCGAGGCGAACGGCAGCAGAGGGAAAAATGACGGAGAGAGAACAAAGAGCTCGAGAGGGGGCTGTCGAAGTCAAGAGAGAGAGGCGAAATGA
GAAGAGGGAAAAAGTAAGGGCTTTTTTGCCCAGTTTTTTGTCGACGCCGTTAGTAACGGCGTCGGCAAAAATGGCCTCTCTCGACGCCGTCAGAGAGAGAGGAATTGAAA
TCAAGGAGGATCAAACACCTCTCGTTGTTGCAAGCAGGATTTCGAAACTGATTGAGGAATCGTCCAAAGACAAGTTTGCTATCAAGGACAACCCATTATTCGACACATTC
ACTCCAACCTCTGAGCAGTTGAAGGACACACCAAATCCTAATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGGATGACAGAGATGGAAAGAAAACTCAA
CCTCCTAATGAAGGCAATTGAGGAAAGGGATCACAAGATTGCCTATTTGAAGAATCAACTGCAAAATCAAGAGGAAAAAGCAAACCTTGCAACTTCCTACTGCATCGACG
TAGAAGAAGTTGACAATTTTGAGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCATTCAACTACTCGTCCTTCGGTGTTCCAAAGAATGAGTATAGTTGCG
ACAGAAGAAGAAAATCAATGTTCGATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAACTGTT
CGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTACTGTCCTGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAGAAAGTTCCTTGAAGCTTCGCACGCTAC
GTTGCTTCGCTGCTATTCCTTCGCCAAGTTCAAAGGTTCACACGCTGTATGCTGCTTCACTGTTGTTCCTTCTTCAAGTTCGAAGGTTTGCACGTTGTTATGTTGCTTCG
TTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGTTGTTTCGCTGCAGTTCTTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCACTATAGTTCCTTCTCTCCAAGT
TCGAAGGTTCTCACGTTGTTTCGCTGCAGTTTCTTCTCTCCAATTTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCT
TCGTTGTAACTCCTTCTCCAATTTTGAAGGTTCTCACACTGCTTTGCTGCAGTTCTTTCTCCAATTTCGAAGGTTCTCACGCTGCTTTGCTGCAGTTCCTTCTCTCCGCT
GCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCGCTGCAATTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACTTGTTCCTTCTCCAAGTTCGAAGGTTCTC
ACGCTGCTTCACTGTAGTTCCTTCCTCAAAATTCGAAGGTTCTCATGCTGCTTCACTGCTTGTTCCTTCTCCAAGTTCGAAGGTTCTAACGTTGCTTCGCTGCAGTTCCT
TCTCTCCAAGTTCAAAGGTTCTCACGTTGCTTCGCTGTAGTTCCTTCTCCAAGTTCAAAGGATCTTTGAGCTTAGGCATGTCGGGAGTCGATCACGCTAATTTGGTGTTA
ATTCGAGCCAATTACGAAGTTTTGGAGCCATCTCGGTGTCTTAGATGGCGAGGAGTTTTGCATGTTATCCCGTTTAAACCAATACATGAGGCTAGTCTATTAGGATTGAC
GACCCTATGTGATTACCGCTTGTTTACGAAGGTTGTTCTCCCTACTGCTAAGGTTCTGCCTGAATCTGAGGATGATCACTTCTCAAGGAAGGACGCGAGGGGGGTTTCAC
CACTTCCCAAAGAAGGATGCAAGGGGGCAAGTGATCAGACTGAAATTTTTCCTGAATCAGGATTTGATCACTTCCCAAGGAAGAATGCGAGGGGGCAAGTGGAAGAATAT
GAGGGAGCAAGTGGTCAGACTGAAATTCTGCCTAAACTAGGGTTTGGCCACTTCCCAAAGAATGATGCAAGGGGACAAGTGATCAGACTGAAATTCCGCCTGAATCAGGG
TTTAATCACTTCCCAAGGAAGAATGTGA
Protein sequenceShow/hide protein sequence
MRRRRTARRTAAEGKMTEREQRAREGAVEVKRERRNEKREKVRAFLPSFLSTPLVTASAKMASLDAVRERGIEIKEDQTPLVVASRISKLIEESSKDKFAIKDNPLFDTF
TPTSEQLKDTPNPNVMSVMMADVDQDERMTEMERKLNLLMKAIEERDHKIAYLKNQLQNQEEKANLATSYCIDVEEVDNFEKGEQRTSVFDRIKHSTTRPSVFQRMSIVA
TEEENQCSMSTFTRPSAFQRLNDQPQRKIDNLEVKLFDEVSSDKKLQSTVLSRMKRKFSVLINTESSLKLRTLRCFAAIPSPSSKVHTLYAASLLFLLQVRRFARCYVAS
LLFLLQVRRFSGCFAAVLSLQVRRFSRCFTIVPSLQVRRFSRCFAAVSSLQFRRFSRCFTAVPSLQVRRFSRCFVVTPSPILKVLTLLCCSSFSNFEGSHAALLQFLLSA
AVPSSKFEGSHAASLQFLLQVRRFSRYLFLLQVRRFSRCFTVVPSSKFEGSHAASLLVPSPSSKVLTLLRCSSFSPSSKVLTLLRCSSFSKFKGSLSLGMSGVDHANLVL
IRANYEVLEPSRCLRWRGVLHVIPFKPIHEASLLGLTTLCDYRLFTKVVLPTAKVLPESEDDHFSRKDARGVSPLPKEGCKGASDQTEIFPESGFDHFPRKNARGQVEEY
EGASGQTEILPKLGFGHFPKNDARGQVIRLKFRLNQGLITSQGRM