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Spg024783 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024783
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold12:9235959..9240382
RNA-Seq ExpressionSpg024783
SyntenySpg024783
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72931.1 hypothetical protein OsI_06781 [Oryza sativa Indica Group]7.6e-0835.9Show/hide
Query:  VQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLR-SLPWLRASRPDLSIPTIEVASDAVGVINLLNHE
        + W+ P  G  KLNVD S D    +GG+G +LRDSSG++I A  + +         E+R  +EGL   L W        ++  I V +D + V+ LLN  
Subjt:  VQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLR-SLPWLRASRPDLSIPTIEVASDAVGVINLLNHE

Query:  EADQSEISFIVDEGEKI
        E D+SE++ IV E +++
Subjt:  EADQSEISFIVDEGEKI

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]6.9e-0936.61Show/hide
Query:  RERFNTQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAV
        R R N     V+W  PP   WKLN DAS  E    GG+GWIL D  G  + AG+ +I+    I  LE+  ++ GL+ +     S        I + SD+V
Subjt:  RERFNTQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAV

Query:  GVINLLNHEEAD
         VI L+  E+ D
Subjt:  GVINLLNHEEAD

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.2e-1038.74Show/hide
Query:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLLNHEEA
        QW PP   +WKLN +A+     N GG+GWILRD  G  I A  R I+    I  LE+  + EGLR++      R +   P I + SD++  I+LL+ +  
Subjt:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLLNHEEA

Query:  DQSEISFIVDE
        DQ+EI ++++E
Subjt:  DQSEISFIVDE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.0e-1235.9Show/hide
Query:  TQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINL
        T ++ ++W PPP   W LN DAS  +  +RGG+GWI+R   G  + AG+R ++    +K LE   +LEGLR+L  L   RP      + + +D+  V +L
Subjt:  TQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINL

Query:  LNHEEADQSEISFIVDE
        LN +  D ++  ++V+E
Subjt:  LNHEEADQSEISFIVDE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.8e-0938.05Show/hide
Query:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSL--PWLRASRPDLSIPTIEVASDAVGVINLLNHE
        +W PP   +WKLN DA+     N GG+GWILRD  G  I A  R I+    I  LE+  + EGLR++     R  + +   P I + SD++  I+LL+ +
Subjt:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSL--PWLRASRPDLSIPTIEVASDAVGVINLLNHE

Query:  EADQSEISFIVDE
          DQ+EI ++++E
Subjt:  EADQSEISFIVDE

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.0e-1038.74Show/hide
Query:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLLNHEEA
        QW PP   +WKLN +A+     N GG+GWILRD  G  I A  R I+    I  LE+  + EGLR++      R +   P I + SD++  I+LL+ +  
Subjt:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLLNHEEA

Query:  DQSEISFIVDE
        DQ+EI ++++E
Subjt:  DQSEISFIVDE

A0A6J1CQG0 uncharacterized protein LOC1110132163.3e-0936.61Show/hide
Query:  RERFNTQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAV
        R R N     V+W  PP   WKLN DAS  E    GG+GWIL D  G  + AG+ +I+    I  LE+  ++ GL+ +     S        I + SD+V
Subjt:  RERFNTQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAV

Query:  GVINLLNHEEAD
         VI L+  E+ D
Subjt:  GVINLLNHEEAD

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-1235.9Show/hide
Query:  TQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINL
        T ++ ++W PPP   W LN DAS  +  +RGG+GWI+R   G  + AG+R ++    +K LE   +LEGLR+L  L   RP      + + +D+  V +L
Subjt:  TQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINL

Query:  LNHEEADQSEISFIVDE
        LN +  D ++  ++V+E
Subjt:  LNHEEADQSEISFIVDE

A0A6J1DSV1 uncharacterized protein LOC1110236088.8e-1038.05Show/hide
Query:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSL--PWLRASRPDLSIPTIEVASDAVGVINLLNHE
        +W PP   +WKLN DA+     N GG+GWILRD  G  I A  R I+    I  LE+  + EGLR++     R  + +   P I + SD++  I+LL+ +
Subjt:  QWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSL--PWLRASRPDLSIPTIEVASDAVGVINLLNHE

Query:  EADQSEISFIVDE
          DQ+EI ++++E
Subjt:  EADQSEISFIVDE

B8AFN2 RNase H domain-containing protein3.7e-0835.9Show/hide
Query:  VQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLR-SLPWLRASRPDLSIPTIEVASDAVGVINLLNHE
        + W+ P  G  KLNVD S D    +GG+G +LRDSSG++I A  + +         E+R  +EGL   L W        ++  I V +D + V+ LLN  
Subjt:  VQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLR-SLPWLRASRPDLSIPTIEVASDAVGVINLLNHE

Query:  EADQSEISFIVDEGEKI
        E D+SE++ IV E +++
Subjt:  EADQSEISFIVDEGEKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.8e-0835Show/hide
Query:  VQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLLNHEE
        VQW  PP+   K N DA+    N R G+GWILR+ SG  +  G+R +    P  +  +   LE LR   W   +    +   I   SDA  ++NLLN ++
Subjt:  VQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLLNHEE

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0424.39Show/hide
Query:  MPVKRTANHDRERFNTQSSHVQWIPPPHGAW-KLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLS
        + VK   + + +   T+SS       P   W K N D S        G+ WI+R+S G+ +  G  + +G   IK  E   ++       W      DL 
Subjt:  MPVKRTANHDRERFNTQSSHVQWIPPPHGAW-KLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLS

Query:  IPTIEVASDAVGVINLLNHEEAD
           +E   D + V  L+ ++E +
Subjt:  IPTIEVASDAVGVINLLNHEEAD

AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0731.43Show/hide
Query:  QSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEG-LRSLPWLRASRPDLSIPTIEVASDAVGVINL
        +SS  +W PPPH   K N DA+ +  N R G+GW+LR+  G     G+R +         +++ VLE  L ++ W   S        +   SD+  +I +
Subjt:  QSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEG-LRSLPWLRASRPDLSIPTIEVASDAVGVINL

Query:  LNHEE
        LN++E
Subjt:  LNHEE

AT5G19270.1 unknown protein3.2e-0429.29Show/hide
Query:  SSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLL
        S  + W PP  G  K NV+A     +   GV WI RD +G ++              R   R++ E LR + W+  S  DL +  + ++SD    I  L
Subjt:  SSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIEVASDAVGVINLL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.8e-0632.86Show/hide
Query:  SSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRS
        S + +W PP     K N DAS  E N   G+GWILR+S G+ I  G  + +G    +  E   ++  +++
Subjt:  SSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATTGTGATCTGTATGCCAGTTAAGAGGACAGCAAATCATGACAGGGAGAGATTCAATACCCAGTCGAGTCATGTTCAGTGGATTCCCCCTCCCCATGGCGCTTG
GAAGCTGAATGTCGACGCCTCTCGCGATGAAATCAACAACAGAGGAGGGGTGGGTTGGATCTTGCGTGACTCCTCTGGTTCTTCAATCTGCGCGGGATCGAGAAGAATCA
AAGGCAATTGGCCCATTAAGAGGCTTGAGATGAGAGTTGTTTTAGAAGGTCTTAGAAGCTTACCTTGGCTGAGAGCCTCTCGCCCGGACCTCTCAATTCCGACAATTGAG
GTCGCCTCTGATGCTGTAGGCGTCATTAATCTGCTCAATCACGAAGAAGCAGACCAATCGGAGATTTCCTTCATCGTTGATGAGGGAGAAAAGATTACTGTGAAGGCTGA
AGCAAGTGGAGAAAAGTGGATGGAGATCGTGACGAGGACGTTCGGTCTCGGCCTACTTAGCGTTTACTTCTCTTTTCCCTTTTCTGGGATTGATGTAGCCGATTGTTGTG
GGTGTCACGCAGATCGGGTTGTTGTGGGTGTCACACAGAACGGGATGTTGTGGGTTTCGCGCAGATCTGGAGAAACGAATGAGAAGAAAAGCGCGTGGATGAAGGTTGCT
GTCGCGCCGAAATCGCGTGGGTGTTGCGTGGTTGTAGGTCTCGTGGGTGAGGGTTGTATTCTCGCAGAAGAGAAGAAATTCAGGAGAAGAAAATCGGGCGGAGAAATCGA
CGTGGGTAAAGGTTGTTGCTGCTGTCGTGGCTGGCGACCACCGCTCGCCACCGCCGGCGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATTGTGATCTGTATGCCAGTTAAGAGGACAGCAAATCATGACAGGGAGAGATTCAATACCCAGTCGAGTCATGTTCAGTGGATTCCCCCTCCCCATGGCGCTTG
GAAGCTGAATGTCGACGCCTCTCGCGATGAAATCAACAACAGAGGAGGGGTGGGTTGGATCTTGCGTGACTCCTCTGGTTCTTCAATCTGCGCGGGATCGAGAAGAATCA
AAGGCAATTGGCCCATTAAGAGGCTTGAGATGAGAGTTGTTTTAGAAGGTCTTAGAAGCTTACCTTGGCTGAGAGCCTCTCGCCCGGACCTCTCAATTCCGACAATTGAG
GTCGCCTCTGATGCTGTAGGCGTCATTAATCTGCTCAATCACGAAGAAGCAGACCAATCGGAGATTTCCTTCATCGTTGATGAGGGAGAAAAGATTACTGTGAAGGCTGA
AGCAAGTGGAGAAAAGTGGATGGAGATCGTGACGAGGACGTTCGGTCTCGGCCTACTTAGCGTTTACTTCTCTTTTCCCTTTTCTGGGATTGATGTAGCCGATTGTTGTG
GGTGTCACGCAGATCGGGTTGTTGTGGGTGTCACACAGAACGGGATGTTGTGGGTTTCGCGCAGATCTGGAGAAACGAATGAGAAGAAAAGCGCGTGGATGAAGGTTGCT
GTCGCGCCGAAATCGCGTGGGTGTTGCGTGGTTGTAGGTCTCGTGGGTGAGGGTTGTATTCTCGCAGAAGAGAAGAAATTCAGGAGAAGAAAATCGGGCGGAGAAATCGA
CGTGGGTAAAGGTTGTTGCTGCTGTCGTGGCTGGCGACCACCGCTCGCCACCGCCGGCGATTGA
Protein sequenceShow/hide protein sequence
MKIVICMPVKRTANHDRERFNTQSSHVQWIPPPHGAWKLNVDASRDEINNRGGVGWILRDSSGSSICAGSRRIKGNWPIKRLEMRVVLEGLRSLPWLRASRPDLSIPTIE
VASDAVGVINLLNHEEADQSEISFIVDEGEKITVKAEASGEKWMEIVTRTFGLGLLSVYFSFPFSGIDVADCCGCHADRVVVGVTQNGMLWVSRRSGETNEKKSAWMKVA
VAPKSRGCCVVVGLVGEGCILAEEKKFRRRKSGGEIDVGKGCCCCRGWRPPLATAGD