; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg024819 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024819
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionflowering time control protein FCA-like
Genome locationscaffold12:11997852..12002031
RNA-Seq ExpressionSpg024819
SyntenySpg024819
Gene Ontology termsNA
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013692.1 Flowering time control protein FCA [Cucurbita argyrosperma subsp. argyrosperma]2.3e-3465.65Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG  GGFRPIP  GGGFGSSFQPPPVAGQKRGYPF+GRGSSPDH D SSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQGYERL
        IRPLFEEHGNVIEVALIKDKRTGQQQG   L
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQGYERL

XP_022930417.1 flowering time control protein FCA isoform X1 [Cucurbita moschata]2.1e-3568.5Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG AGGFRPIP  GGGFGS+FQPPPVAGQKRGYPFSGRGSSPDH DGSSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

XP_022930421.1 flowering time control protein FCA isoform X2 [Cucurbita moschata]2.1e-3568.5Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG AGGFRPIP  GGGFGS+FQPPPVAGQKRGYPFSGRGSSPDH DGSSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

XP_023514090.1 flowering time control protein FCA-like isoform X1 [Cucurbita pepo subsp. pepo]1.0e-3468.25Show/hide
Query:  GAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEI
        G AGGFRPIP  GGGFGS+FQPPPVAGQKRGYPFSGRGSSPDH DGSSFAKLFVGSVPRT TEED                                  I
Subjt:  GAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEI

Query:  RPLFEEHGNVIEVALIKDKRTGQQQG
        RPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  RPLFEEHGNVIEVALIKDKRTGQQQG

XP_023514094.1 flowering time control protein FCA-like isoform X2 [Cucurbita pepo subsp. pepo]1.0e-3468.25Show/hide
Query:  GAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEI
        G AGGFRPIP  GGGFGS+FQPPPVAGQKRGYPFSGRGSSPDH DGSSFAKLFVGSVPRT TEED                                  I
Subjt:  GAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEI

Query:  RPLFEEHGNVIEVALIKDKRTGQQQG
        RPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  RPLFEEHGNVIEVALIKDKRTGQQQG

TrEMBL top hitse value%identityAlignment
A0A6J1EQF7 flowering time control protein FCA isoform X19.9e-3668.5Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG AGGFRPIP  GGGFGS+FQPPPVAGQKRGYPFSGRGSSPDH DGSSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

A0A6J1EQW4 flowering time control protein FCA isoform X29.9e-3668.5Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG AGGFRPIP  GGGFGS+FQPPPVAGQKRGYPFSGRGSSPDH DGSSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

A0A6J1H3Q0 flowering time control protein FCA-like isoform X21.9e-3466.93Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG  GGFRPIP  GGGFGSSFQPPPVAGQKRGYPF+GRGSSPDH D SSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

A0A6J1H400 flowering time control protein FCA-like isoform X11.9e-3466.93Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG  GGFRPIP  GGGFGSSFQPPPVAGQKRGYPF+GRGSSPDH D SSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

A0A6J1H531 flowering time control protein FCA-like isoform X31.9e-3466.93Show/hide
Query:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE
        MG  GGFRPIP  GGGFGSSFQPPPVAGQKRGYPF+GRGSSPDH D SSFAKLFVGSVPRT TEED                                  
Subjt:  MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIE

Query:  IRPLFEEHGNVIEVALIKDKRTGQQQG
        IRPLFEEHGNVIEVALIKDKRTGQQQG
Subjt:  IRPLFEEHGNVIEVALIKDKRTGQQQG

SwissProt top hitse value%identityAlignment
B8BCZ8 Flowering time control protein FCA1.9e-1238.06Show/hide
Query:  GAAGGFRPI-----PAAGGGF---GSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVET
        G  G F P       + GGG+   G      P +G +  Y  SGRG   DH + +++ KLF+GSVPRTATE+D                           
Subjt:  GAAGGFRPI-----PAAGGGF---GSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVET

Query:  RDKVLIEIRPLFEEHGNVIEVALIKDKRTGQQQG
               +RPLFEEHG+V+EVALIKD++TG+QQG
Subjt:  RDKVLIEIRPLFEEHGNVIEVALIKDKRTGQQQG

O04425 Flowering time control protein FCA2.2e-1651.43Show/hide
Query:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT
        P++GQKRGYP S  GS    D  D SS  KLFVGSVPRTATEE                                  EIRP FE+HGNV+EVALIKDKRT
Subjt:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT

Query:  GQQQG
        GQQQG
Subjt:  GQQQG

Q6K271 Flowering time control protein FCA1.9e-1238.06Show/hide
Query:  GAAGGFRPI-----PAAGGGF---GSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVET
        G  G F P       + GGG+   G      P +G +  Y  SGRG   DH + +++ KLF+GSVPRTATE+D                           
Subjt:  GAAGGFRPI-----PAAGGGF---GSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVET

Query:  RDKVLIEIRPLFEEHGNVIEVALIKDKRTGQQQG
               +RPLFEEHG+V+EVALIKD++TG+QQG
Subjt:  RDKVLIEIRPLFEEHGNVIEVALIKDKRTGQQQG

Arabidopsis top hitse value%identityAlignment
AT4G16280.2 RNA binding;abscisic acid binding1.6e-1751.43Show/hide
Query:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT
        P++GQKRGYP S  GS    D  D SS  KLFVGSVPRTATEE                                  EIRP FE+HGNV+EVALIKDKRT
Subjt:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT

Query:  GQQQG
        GQQQG
Subjt:  GQQQG

AT4G16280.3 RNA binding;abscisic acid binding1.6e-1751.43Show/hide
Query:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT
        P++GQKRGYP S  GS    D  D SS  KLFVGSVPRTATEE                                  EIRP FE+HGNV+EVALIKDKRT
Subjt:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT

Query:  GQQQG
        GQQQG
Subjt:  GQQQG

AT4G16280.4 RNA binding;abscisic acid binding1.6e-1751.43Show/hide
Query:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT
        P++GQKRGYP S  GS    D  D SS  KLFVGSVPRTATEE                                  EIRP FE+HGNV+EVALIKDKRT
Subjt:  PVAGQKRGYPFSGRGS--SPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGNVIEVALIKDKRT

Query:  GQQQG
        GQQQG
Subjt:  GQQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTGCCGGGGGATTCCGTCCAATTCCTGCTGCTGGCGGTGGTTTTGGCTCCAGTTTCCAGCCGCCACCTGTTGCAGGGCAGAAACGGGGGTACCCTTTCTCCGG
CCGTGGAAGTTCTCCAGATCATCCGGATGGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAGCCACAGAAGAAGATACATGTGGTACATTCTCTTATG
ATATGAGAAAGTCTGGATGTGCTCCTATAGATGAGATGTTTTCACATTCTGTTGAAACAAGAGACAAGGTTCTCATTGAAATTCGCCCATTGTTTGAAGAACATGGAAAT
GTGATTGAAGTAGCCTTGATAAAGGATAAGAGAACAGGCCAACAACAAGGTTATGAGAGGCTCGAAGAAATCGTGAGCTCGTCTCAGTTTGTTTTTGCAACAAGTTTGGT
GCTTGTTGGTTTTCGTTGCGATCCTAACTTTTTGTCCATCATGTCAAACAAGAAGAAGACAAGGCATGTAAACCTGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTGCCGGGGGATTCCGTCCAATTCCTGCTGCTGGCGGTGGTTTTGGCTCCAGTTTCCAGCCGCCACCTGTTGCAGGGCAGAAACGGGGGTACCCTTTCTCCGG
CCGTGGAAGTTCTCCAGATCATCCGGATGGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAGCCACAGAAGAAGATACATGTGGTACATTCTCTTATG
ATATGAGAAAGTCTGGATGTGCTCCTATAGATGAGATGTTTTCACATTCTGTTGAAACAAGAGACAAGGTTCTCATTGAAATTCGCCCATTGTTTGAAGAACATGGAAAT
GTGATTGAAGTAGCCTTGATAAAGGATAAGAGAACAGGCCAACAACAAGGTTATGAGAGGCTCGAAGAAATCGTGAGCTCGTCTCAGTTTGTTTTTGCAACAAGTTTGGT
GCTTGTTGGTTTTCGTTGCGATCCTAACTTTTTGTCCATCATGTCAAACAAGAAGAAGACAAGGCATGTAAACCTGCTATAA
Protein sequenceShow/hide protein sequence
MGAAGGFRPIPAAGGGFGSSFQPPPVAGQKRGYPFSGRGSSPDHPDGSSFAKLFVGSVPRTATEEDTCGTFSYDMRKSGCAPIDEMFSHSVETRDKVLIEIRPLFEEHGN
VIEVALIKDKRTGQQQGYERLEEIVSSSQFVFATSLVLVGFRCDPNFLSIMSNKKKTRHVNLL