CuGenDBv2

Gene ID	Spg024824
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	NERD domain-containing protein
Genome location	scaffold12:15322920..15328086
RNA-Seq Expression	Spg024824
Synteny	Spg024824
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605718.1 hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia]

8.3e-29

35.58

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGV LPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQW+QLKPEPKS+FSGWIKSALRGGKKE+QES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

KAG7035626.1 hypothetical protein SDJN02_02424 [Cucurbita argyrosperma subsp. argyrosperma]

8.3e-29

35.58

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGV LPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQW+QLKPEPKS+FSGWIKSALRGGKKE+QES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

XP_022957721.1 uncharacterized protein LOC111459180 [Cucurbita moschata]

2.2e-29

35.96

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGVALPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQW+QLKPEPKS+FSGWIKSALRGGKKE+QES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

XP_022995191.1 uncharacterized protein LOC111490811 [Cucurbita maxima]

1.7e-29

36.33

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGVALPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQWIQLKPE KS+FSGWIKSALRGGKKEMQES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

XP_023534697.1 uncharacterized protein LOC111796185 [Cucurbita pepo subsp. pepo]

2.2e-29

35.96

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGVALPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQW+QLKPEPKS+FSGWIKSALRGGKKE+QES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG9 NERD domain-containing protein

2.2e-27

34.46

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRW SILESY E RGVALPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            T+HSNYFPSEVI YDQWI LKPEPKS+FSGWIKSA  GGKKEMQ+SMDQKLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

A0A5J5AUD1 NERD domain-containing protein

1.2e-25

48.53

Show/hide

Query:  FSEFNFDGKWRLIGDLHFKIENWSTEKHSDP--------KVIEGYGGWISLKNLPLSYWKRSSFEAIGEHFGGTVHSNYFPSEVITYDQWIQLKPEPKSI
        F   + DG W   G+   K     T++H DP         ++E Y   +  +         S           T+HSNYFPSEVITYDQW+QLKPEPKS+
Subjt:  FSEFNFDGKWRLIGDLHFKIENWSTEKHSDP--------KVIEGYGGWISLKNLPLSYWKRSSFEAIGEHFGGTVHSNYFPSEVITYDQWIQLKPEPKSI

Query:  FSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
        FSGWIK A RGGKKEMQES+ Q LNF+L+TAPMWDR
Subjt:  FSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

A0A6J1DTU9 uncharacterized protein LOC111023945

4.9e-27

35.21

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        V ETRRWASILESYLE RGVALPEGYLS KVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVH NYFPSEV+TYDQ+IQLKPEPKS FSGWIK ALRGGKKEMQESMDQKLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

A0A6J1H014 uncharacterized protein LOC111459180

1.1e-29

35.96

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGVALPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQW+QLKPEPKS+FSGWIKSALRGGKKE+QES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

A0A6J1K1B0 uncharacterized protein LOC111490811

8.1e-30

36.33

Show/hide

Query:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR
        VAETRRWASILESYLE RGVALPEGYLSWKVLLPNPKFR                                                             
Subjt:  VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTR

Query:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE
                                                                                                            
Subjt:  LLAHNSWKVVQDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGE

Query:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR
            TVHSNYFPSEVITYDQWIQLKPE KS+FSGWIKSALRGGKKEMQES D+KLNFVLNTAPMWDR
Subjt:  HFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

3.2e-18

43.2

Show/hide

Query:  DGKWRLIGDLHFKIENWS---TEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGEHFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRG
        DG W   G  H   E +     E      V+E Y   +  + + L     S    I      T+H+  FPSEVITY+ W QLKP  KS  SGW+K A   
Subjt:  DGKWRLIGDLHFKIENWS---TEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGEHFGGTVHSNYFPSEVITYDQWIQLKPEPKSIFSGWIKSALRG

Query:  GKKEMQESMDQKLNFVLNTAPMWDR
        G KEMQES  QKLNF+L TAP WDR
Subjt:  GKKEMQESMDQKLNFVLNTAPMWDR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTGATCATAGCCTTGTCGGAAGATGGAGGGAGACCTTGATCATAGCCTTGCGAGAAAGATGCTTACTTTGGTTGGCCCATTTTGTTGCATTGAAGATGGAGGGAGA
CCTTGATCATAGCCTCTGGAGTTGTGATTTTGCCCTGTTTGTTTGGAGCCTTTTCTTTGATGTGTTTGGTTTTCAGGTGGTGAGACATAGAGATTACAAGGAGATGATCA
AGGAGTTCCTCTTCCATTCGCTTTTTCGCGAGAAAGGGAGGTTTTTGTGGCAAACTGGGGTGTACGCATTATTGTGGATCTATGGGGGGAGAGCAATAGAGTATTTAGGG
GTGGCTGAGACACGAAGATGGGCTTCAATTCTTGAATCATACCTTGAGCTGAGAGGAGTTGCTCTTCCGGAAGGATATTTATCGTGGAAAGTTTTGCTTCCCAACCCAAA
ATTCCGGTATGTAATGGATAATCCCTATTTTTATGCTTCTGATGTCGGACTTGGTTCCTTACTGAAGAAGGATTTCCCAGTTTCTAGCTTGATGGAATCAATGTTGTTGA
GGCAAGAGGGAGGGGAGATGAGGCTTCAGCACCATAAAGTGGTTGAAGTTAATCTCAACGAATCTTTAGTACTCACTCGATTGCTTGCGCATAACTCTTGGAAGGTTGTT
CAAGATACTCTTGAGGTTTACTTTCAATCTAAGGTCATAATTAATCCTTTTATGGCAGACAAGGCTTTGCTAAAAGTAAATGATGAATTTTCTGAGTTTAACTTTGATGG
AAAGTGGAGACTAATTGGAGATTTGCATTTCAAGATTGAGAATTGGTCCACAGAGAAGCATTCTGATCCGAAAGTAATAGAAGGTTATGGAGGTTGGATTTCATTGAAAA
ACTTACCTTTGTCTTATTGGAAGCGTTCTTCTTTTGAAGCTATTGGAGAACACTTTGGGGGAACGGTCCATTCAAACTATTTTCCTTCTGAAGTCATCACATATGATCAG
TGGATACAGTTGAAACCAGAACCAAAAAGCATATTCTCTGGTTGGATAAAGAGTGCTTTGCGTGGAGGGAAAAAAGAGATGCAGGAATCGATGGATCAGAAGCTAAATTT
TGTCCTCAACACTGCACCCATGTGGGATAGGTTTGTACGTGTTGAGATTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLDHSLVGRWRETLIIALRERCLLWLAHFVALKMEGDLDHSLWSCDFALFVWSLFFDVFGFQVVRHRDYKEMIKEFLFHSLFREKGRFLWQTGVYALLWIYGGRAIEYLG
VAETRRWASILESYLELRGVALPEGYLSWKVLLPNPKFRYVMDNPYFYASDVGLGSLLKKDFPVSSLMESMLLRQEGGEMRLQHHKVVEVNLNESLVLTRLLAHNSWKVV
QDTLEVYFQSKVIINPFMADKALLKVNDEFSEFNFDGKWRLIGDLHFKIENWSTEKHSDPKVIEGYGGWISLKNLPLSYWKRSSFEAIGEHFGGTVHSNYFPSEVITYDQ
WIQLKPEPKSIFSGWIKSALRGGKKEMQESMDQKLNFVLNTAPMWDRFVRVEI

Spg024824 (gene) of Sponge gourd (cylindrica) v1 genome