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Spg024840 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg024840
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold12:10482448..10482921
RNA-Seq ExpressionSpg024840
SyntenySpg024840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8379865.1 hypothetical protein BUALT_Bualt07G0133800 [Buddleja alternifolia]1.7e-0437.65Show/hide
Query:  LAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGF
        L++ KE L   L  VRR   ++I+E D ++VI+ L   +SD S    I++DI  L +      +    R GNRVAHC AR  + F
Subjt:  LAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGF

VAI60256.1 unnamed protein product [Triticum turgidum subsp. durum]8.4e-0445.68Show/hide
Query:  ELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLAR
        E  AI+ GLE    L   G   +IVE+D++EVI+A N  I   S   AI+ D    + R+G VSF  C RE NR+AH LAR
Subjt:  ELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLAR

XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]2.9e-0439.78Show/hide
Query:  SLELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGFLQLSS
        S+E+  +     A       G   +IVE D+  VIKAL+      S    IV D++ LA+ LG+VSF    R+GNRVAH LAR A  F+   S
Subjt:  SLELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGFLQLSS

XP_023889222.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber]6.5e-0436.36Show/hide
Query:  SLELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGFLQLSSPSTGAVD
        S+E+  +     A       G   +IVE D+  VIKAL+      S    IV D++ LA+ LG+V F    R+GNRVAH LAR A  F+   S   G   
Subjt:  SLELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGFLQLSSPSTGAVD

Query:  SFSDCISSSS
        +  +  SS+S
Subjt:  SFSDCISSSS

XP_024195627.1 uncharacterized protein LOC112198738 [Rosa chinensis]1.3e-0439.51Show/hide
Query:  ELAAIKEGLEAYLSL-VRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLA
        +L A+K GLE   +L V R     ++E+D +  ++A+N    D+SE  A++ DI+ L T +G+V+    PR+ N VAHCLA
Subjt:  ELAAIKEGLEAYLSL-VRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLA

TrEMBL top hitse value%identityAlignment
A0A446WJF0 RNase H domain-containing protein4.1e-0445.68Show/hide
Query:  ELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLAR
        E  AI+ GLE    L   G   +IVE+D++EVI+A N  I   S   AI+ D    + R+G VSF  C RE NR+AH LAR
Subjt:  ELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGAAGTAAGCGAATCAATCGGAAATGGAGGATCAACTCGTTGGAGCTAGCGGCAATTAAGGAAGGGCTAGAGGCGTACCTGTCTCTGGTTCGAAGAGGGCGTGG
CGCGTTGATCGTTGAAGCGGACGCCATGGAGGTGATTAAAGCTCTAAATTTTGAAATCAGCGATATCTCCGAAGCCAAGGCAATCGTGATTGATATTGAGGATCTGGCGA
CTAGGTTGGGAGATGTTTCCTTCGTAAAATGCCCAAGAGAGGGCAATAGAGTGGCGCACTGTCTTGCGCGAGCTGCAGCGGGATTTCTGCAGCTTTCTTCTCCGTCGACC
GGTGCTGTGGACAGCTTTTCTGACTGTATTTCTTCTTCTTCCATGCTGGAAGGGTCTACTTTTTGTAGGGAAGCTTTTATTCCCATTTGGTTATCCTCGCTGATCTCTGA
GGATGGTAGTTGTAACGAACCCTTTCGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGAAGTAAGCGAATCAATCGGAAATGGAGGATCAACTCGTTGGAGCTAGCGGCAATTAAGGAAGGGCTAGAGGCGTACCTGTCTCTGGTTCGAAGAGGGCGTGG
CGCGTTGATCGTTGAAGCGGACGCCATGGAGGTGATTAAAGCTCTAAATTTTGAAATCAGCGATATCTCCGAAGCCAAGGCAATCGTGATTGATATTGAGGATCTGGCGA
CTAGGTTGGGAGATGTTTCCTTCGTAAAATGCCCAAGAGAGGGCAATAGAGTGGCGCACTGTCTTGCGCGAGCTGCAGCGGGATTTCTGCAGCTTTCTTCTCCGTCGACC
GGTGCTGTGGACAGCTTTTCTGACTGTATTTCTTCTTCTTCCATGCTGGAAGGGTCTACTTTTTGTAGGGAAGCTTTTATTCCCATTTGGTTATCCTCGCTGATCTCTGA
GGATGGTAGTTGTAACGAACCCTTTCGTGTTTAA
Protein sequenceShow/hide protein sequence
MAGSKRINRKWRINSLELAAIKEGLEAYLSLVRRGRGALIVEADAMEVIKALNFEISDISEAKAIVIDIEDLATRLGDVSFVKCPREGNRVAHCLARAAAGFLQLSSPST
GAVDSFSDCISSSSMLEGSTFCREAFIPIWLSSLISEDGSCNEPFRV